PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019157014.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 308aa    MW: 33981.9 Da    PI: 6.3593
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019157014.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv  v+++G+ +W+t+++  g++R+ k+c++rw +yl
   XP_019157014.1 14 KGPWTPEEDIMLVSFVQEHGPANWRTVPANTGLRRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding48.22.5e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
   XP_019157014.1  67 RGSFTHQEEKMIIQLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 112
                      899*******************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MGRPPCCDKQ GVKKGPWTPE EDIMLVSFVQ EHGPANWRTV PANTGLRRCS KSCRLRWTNY  60
LRPGIKRGSF THQEEKMIIQ LQALLGNKWA AIASYLPERT DNDIKNYWNT HLKKKLRLME  120
SGGGLMIDSA SRLSSSSSSS QSSSRGQWER TLQADINTAK QALTDALSLE KSHRHRPLLD  180
FTAVPQPAPP PYASSTDNIA RLLKGWMETP AKSYSSTPCI STTSNSNAAA AATPTTVTDT  240
SSSSYCDDNA PGKDDDGICL SEAFESLFGF DSSSDQFSQS YESKPQVPLS VMLESWLLDD  300
DNENGDLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.13e-90MYB family protein