PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019156899.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 345aa MW: 38728 Da PI: 8.164

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019156899.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.8	1e-19	46	145	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY++YAk++GF+v +++ k+ r+g+it++ Cs+ g++ ++ + +++++r+r+++r+gC+ak++ k+ +++ +ev+++e+ H XP_019156899.1 46 QFYQTYAKSTGFDVHRASDKRD-RHGKITWKYVLCSRAGFKLPTGEGdgvgilttdhKNTTKRRRVTNRVGCNAKIVFKRLDSDSFEVNSIEERH 139 6**************98887.7777************99999**999899999**************************** PP FAR1 86 nHelap 91 +H+l++ XP_019156899.1 140 THSLCT 145 **85 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MAATNNNESC VINISAGTTK YWTPKCEPTK KPFPGQVFTS LEAAIQFYQT YAKSTGFDVH 60 RASDKRDRHG KITWKYVLCS RAGFKLPTGE GDGVGILTTD HKNTTKRRRV TNRVGCNAKI 120 VFKRLDSDSF EVNSIEERHT HSLCTPISRP FMKANRKLDL GHQNFIINCS KANIGSCKSF 180 TLYEEMVGGF ENVGATVTDF GNFKRDIMAY IEDTDAQLVI DKYMEKKNVS PDFYFAHDVD 240 ELDQLCRIFW ADPQARHNFK LFGDTMSFDA TYDHGVYTKP VCIDAPCKCL MGTQLPNTLL 300 ENTSATEGYQ AHVCPPGTQY KLVFVPFTGV DHHKKSVTFA AGLIA

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MAATNNNESC VINISAGTTK YWTPKCEPTK KPFPGQVFTS LEAAIQFYQT YAKSTGFDVH  60
RASDKRDRHG KITWKYVLCS RAGFKLPTGE GDGVGILTTD HKNTTKRRRV TNRVGCNAKI  120
VFKRLDSDSF EVNSIEERHT HSLCTPISRP FMKANRKLDL GHQNFIINCS KANIGSCKSF  180
TLYEEMVGGF ENVGATVTDF GNFKRDIMAY IEDTDAQLVI DKYMEKKNVS PDFYFAHDVD  240
ELDQLCRIFW ADPQARHNFK LFGDTMSFDA TYDHGVYTKP VCIDAPCKCL MGTQLPNTLL  300
ENTSATEGYQ AHVCPPGTQY KLVFVPFTGV DHHKKSVTFA AGLIA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	110	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-23	FAR1 family protein