PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019156865.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 164aa    MW: 18375.9 Da    PI: 8.605
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019156865.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.31.8e-112593190
            FAR1 31 rtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                    + f+Csk g++ + +     +  ++   rtgC a+++    +dg w vtk ++ HnHel+
  XP_019156865.1  2 KMFMCSKAGFKVKANAG--VRAYSKIDIRTGCGACVQFDVGEDGLWTVTKHVKVHNHELC 59
                    67*********998877..7888999*********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MKMFMCSKAG FKVKANAGVR AYSKIDIRTG CGACVQFDVG EDGLWTVTKH VKVHNHELCA  60
VDKSHLLRSH RNVGDNQLLY LKDLKKSGVA MTDGIRFLKH QAGGSPLIGF TNRDAYNSIA  120
SDTSKRLDGT DSNSLIEIFR KRQSTESDFF FDFEVDCDSR LCSW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-16FAR1 family protein