PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019156802.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 631aa MW: 69096.8 Da PI: 6.9786

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019156802.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51	3.5e-16	294	353	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_019156802.1 294 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 353 78*****************988886678446***********************98 PP
2	AP2	46.5	9e-15	396	447	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_019156802.1 396 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 447 57**************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 631 aa Download sequence
MNDKNSNGNN NNENNGGGNN SWLGFSLSPH MKMEVSSPSS TTAAMAAASS FHLSPSLCYG 60 VGEASAFHFP LPVMPLKSDG SLCIMQPLSR SHPNGMVPNG SPKLEDFLGG ATMGDNQFGS 120 HEREAMALSL DSIYYHNPDP QEAARHRAFD FLQEPQTHHS YFSTLQCHDL YQEPLDGEPK 180 STHHLAECVE NELKNWVSVG QFGGGQQPLD HHPTTTTMVA EGGGGGGMGC NELQSLSLSM 240 SPGSQSSCVT AARQISPTEL ECVAMESKKR ASMKVAPKQP VHRKSIDTFG QRTSQYRGVT 300 RHRWTGRYEA HLWDNSCKKE GQTRKGRQVY LGGYDMEEKA ARAYDLAALK YWGPSTHINF 360 PLENYQKELE EMKNMTRQEY VAHLRRKSSG FSRGASIYRG VTRHHQHGRW QARIGRVAGN 420 KDLYLGTFST QEEAAEAYDI AAIKFRGVNA VTNFDISRYD VDKIIASNTL PTGEVARRNK 480 EIREPVVEAA AAIEYNMAPE GECVQDGRTT ANNASDWNMM LYTSPGQQQN VSSIGGYQKQ 540 QPGFSLHDVF GNGSQGVLQQ DESNKMVDSH ISNPSSLVTS LGSSREGSPD KTGAASMVFT 600 AKPPATKFLI PAGNVASSMP HLPVYAGWND T

Sequence ? help Back to Top

Protein Sequence Length: 631 aa Download sequence

MNDKNSNGNN NNENNGGGNN SWLGFSLSPH MKMEVSSPSS TTAAMAAASS FHLSPSLCYG  60
VGEASAFHFP LPVMPLKSDG SLCIMQPLSR SHPNGMVPNG SPKLEDFLGG ATMGDNQFGS  120
HEREAMALSL DSIYYHNPDP QEAARHRAFD FLQEPQTHHS YFSTLQCHDL YQEPLDGEPK  180
STHHLAECVE NELKNWVSVG QFGGGQQPLD HHPTTTTMVA EGGGGGGMGC NELQSLSLSM  240
SPGSQSSCVT AARQISPTEL ECVAMESKKR ASMKVAPKQP VHRKSIDTFG QRTSQYRGVT  300
RHRWTGRYEA HLWDNSCKKE GQTRKGRQVY LGGYDMEEKA ARAYDLAALK YWGPSTHINF  360
PLENYQKELE EMKNMTRQEY VAHLRRKSSG FSRGASIYRG VTRHHQHGRW QARIGRVAGN  420
KDLYLGTFST QEEAAEAYDI AAIKFRGVNA VTNFDISRYD VDKIIASNTL PTGEVARRNK  480
EIREPVVEAA AAIEYNMAPE GECVQDGRTT ANNASDWNMM LYTSPGQQQN VSSIGGYQKQ  540
QPGFSLHDVF GNGSQGVLQQ DESNKMVDSH ISNPSSLVTS LGSSREGSPD KTGAASMVFT  600
AKPPATKFLI PAGNVASSMP HLPVYAGWND T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-146	AP2 family protein