PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019156786.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRF | ||||||||
Protein Properties | Length: 562aa MW: 59990.9 Da PI: 8.6188 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78 | 9e-25 | 204 | 248 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e+ XP_019156786.1 204 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVES 248 79****************************************986 PP | |||||||
2 | QLQ | 61.7 | 2e-21 | 134 | 170 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+Pp+Ll +i+k XP_019156786.1 134 GPFTPSQWMELEHQALIYKYITANVPIPPYLLNPIKK 170 59*********************************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 562 aa Download sequence |
MDFGGVLDSG VVVACSDTKT ATTATSNALF TAASEAVSDA ETKQKWYGSV GFLKQERTSG 60 ANHAVEDDMR GSKMAKITAA TLPRSPFVGS EPHQMLSFSS SSSSPYYPHA SFGGNPGYGI 120 DGNMHGVMMS GVKGPFTPSQ WMELEHQALI YKYITANVPI PPYLLNPIKK AIESAALSTF 180 GLRVNSLGWG GAGGFHLGFS SNTDPEPGRC RRTDGKKWRC SRDAVADQKY CERHMNRGRH 240 RSRKPVESPS GHPASGATTT TAAKLMPGAS STSSSSSSAA AAAVSGGGAS NSLAFSHHNQ 300 LSNLHLPAAT NHLDSRSFLD KEYAGERYQD PTGLSITSPI LKDRQYSSIP KDQNPYEESS 360 TLKFGLVCSD SLLNPLSRNY GASKVVSDRE NKSQHPIRQF MDNWPKNPSD RSMVSWPEID 420 NTQLSISIPM ATSDSREIEA TQMRLGVGGV INEQNQRQGN WIPIPWESSM GGPLGEVLHG 480 TNSMTSECKN PSALNLMTEG WNGSPKPASS PTGVLQKAVF YSISNSSAGS SPRGKSNKNT 540 NGASPCNEIL GATLMNPSLP AL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 4e-67 | GRF family protein |