PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019156732.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 661aa    MW: 72948.1 Da    PI: 5.799
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019156732.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS304.82e-933046605374
            GRAS   5 LlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                     ++++Ae + + ++++a+ +Larl+++ sp ++p++R+a+yf+eAL+  l++     + +lpp+  s+ + + ++ a+k+fsevsP+++f ++t N
  XP_019156732.1 304 VYKAAELILNLQFSNAEMILARLNHRLSPMAKPLERAAFYFKEALHLPLTS-----VPSLPPRIPSPVDGVFKMGAYKVFSEVSPLIQFMNFTSN 393
                     6899***********************************************.....7789999999999************************** PP

            GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle..dlel 191
                     qaIleav+g+e++Hi Dfdi  G+QW +++q+L  R+ + pp l+iT+++sp++++  e++ ++e+L++fA+e+gv+fe +v+  ++++  +  +
  XP_019156732.1 394 QAILEAVDGAECIHIFDFDIAFGAQWSSFMQELPRRNrRAPPWLKITAFASPSTHHPIEINLMHENLTQFANEVGVKFELEVVNFDSFDpsSYPV 488
                     *************************************78899****************************************9666554114467 PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     +++r ++ Ea+aVn+ +   + +  +++l+     +L+ +k+lsPkvvv   +  ++++ +F +++l+al+y+ alf+s++a+   + ++ +k+E
  XP_019156732.1 489 SSFRSSESEAIAVNFPVWSVSSH--RATLP----LLLHYIKQLSPKVVVSLARGYERTELPFPHHLLNALQYFEALFESIDAG-NVTPDASNKIE 576
                     8889999********99655554..44444....5*********************************************887.5677999**** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     r+l++++i+++v    +       ++  Wr+ + +aGF+p p+s++a++qa++++++++ +g++v+++++sl l+W++r+L+s++aWr
  XP_019156732.1 577 RFLFQPSIESIVFGHLRF----PDQMPPWRNLFASAGFQPHPFSNFAETQAECVVKRTETRGFHVQKHHASLALCWQNRELLSATAWR 660
                     ************998887....8999*************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    
MIGMQYNSNS LQGKSVVEVS RFGSAISSSL VPPDAAKFKK NGGFASSEPV SVLDTRSPSP  60
STSTSASSSS HGGGGGYKTA SLVAPPIATT TQTMEAKEKC VGELHPAPEW SEGPEKFDLG  120
MEDWECLLAE SGGSDQYLLR WISGDVEDPS LSLKQLLQGG NNPSEIGFGA SDQTTSSDNY  180
NGNSQGPNVN FPHSNLAILG SGLSVQELQY EQKPQTFNSP VLTELQNVVM SPNVFSSPLY  240
GIHQEQQPPS KRQNSGSRVS EGVFLNPSNG FLDRPPDILS VQPKKEAGFG TENLQEQQAV  300
YDYVYKAAEL ILNLQFSNAE MILARLNHRL SPMAKPLERA AFYFKEALHL PLTSVPSLPP  360
RIPSPVDGVF KMGAYKVFSE VSPLIQFMNF TSNQAILEAV DGAECIHIFD FDIAFGAQWS  420
SFMQELPRRN RRAPPWLKIT AFASPSTHHP IEINLMHENL TQFANEVGVK FELEVVNFDS  480
FDPSSYPVSS FRSSESEAIA VNFPVWSVSS HRATLPLLLH YIKQLSPKVV VSLARGYERT  540
ELPFPHHLLN ALQYFEALFE SIDAGNVTPD ASNKIERFLF QPSIESIVFG HLRFPDQMPP  600
WRNLFASAGF QPHPFSNFAE TQAECVVKRT ETRGFHVQKH HASLALCWQN RELLSATAWR  660
C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-105GRAS family protein