PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019156577.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 663aa MW: 71480.6 Da PI: 5.0825

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019156577.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.2	1.3e-12	491	536	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L XP_019156577.1 491 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 536 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 663 aa Download sequence
MTDYRLPSTN LWAATASAAG DDASMMEAFL SSDMPQFWLP PSTTATTNNG GGASAAMTTT 60 SAHAPPPPPA AAAFNQETLQ QRLQTLIDGA QESWTYAIFW QSSVDDFAAQ AFLGWGDGYY 120 KGEEDKAKRS KKGSSPASIA EQEHRKKVLR ELNSLISGPA STDDAVDEEV TDTEWFFLVS 180 MTQSFMTGSG LPGQAFYTSN PVWLAGPERL AGSVCERARQ AQGFGLQTMV CIPSANGVVE 240 LGSTEVIFQS TDLMNKVRVL FNFNNPDLGS ISASGSWAAQ PENDPSALWL TDPGPEVKDS 300 VNTNVQGNSF PSSITKQIVF GNENPNPATV ETQSNNNNSQ LFPRGLNFSE FGLDGGGAAV 360 RNETSSLSCK RESGEILNFG DNAVKRSACS GNDAIFSGQF PAADENNNNN KNKKRTTTSR 420 GSNDEGMLSF VSGVVVPSAG GAGGATGDSD HSDLEASVVR EADSSRVVVE PEKRPKKRGR 480 KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNVSKM DKASLLGDAI SYINELKSKL 540 QTAESAQEDL KTQLESIKKE SRHPPPPPPP EPPLKLAGKI VDIDVDVKII GWDAMIRIQC 600 SKKNHPAARL MVALKDLDLD VHHASVSVVN DLMIQQATVK MGSHVYNQEE LRLALTSSIA 660 ANR

Sequence ? help Back to Top

Protein Sequence Length: 663 aa Download sequence

MTDYRLPSTN LWAATASAAG DDASMMEAFL SSDMPQFWLP PSTTATTNNG GGASAAMTTT  60
SAHAPPPPPA AAAFNQETLQ QRLQTLIDGA QESWTYAIFW QSSVDDFAAQ AFLGWGDGYY  120
KGEEDKAKRS KKGSSPASIA EQEHRKKVLR ELNSLISGPA STDDAVDEEV TDTEWFFLVS  180
MTQSFMTGSG LPGQAFYTSN PVWLAGPERL AGSVCERARQ AQGFGLQTMV CIPSANGVVE  240
LGSTEVIFQS TDLMNKVRVL FNFNNPDLGS ISASGSWAAQ PENDPSALWL TDPGPEVKDS  300
VNTNVQGNSF PSSITKQIVF GNENPNPATV ETQSNNNNSQ LFPRGLNFSE FGLDGGGAAV  360
RNETSSLSCK RESGEILNFG DNAVKRSACS GNDAIFSGQF PAADENNNNN KNKKRTTTSR  420
GSNDEGMLSF VSGVVVPSAG GAGGATGDSD HSDLEASVVR EADSSRVVVE PEKRPKKRGR  480
KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNVSKM DKASLLGDAI SYINELKSKL  540
QTAESAQEDL KTQLESIKKE SRHPPPPPPP EPPLKLAGKI VDIDVDVKII GWDAMIRIQC  600
SKKNHPAARL MVALKDLDLD VHHASVSVVN DLMIQQATVK MGSHVYNQEE LRLALTSSIA  660
ANR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	473	481	KRPKKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	1e-168	bHLH family protein