PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019156135.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family BBR-BPC
Protein Properties Length: 305aa    MW: 34007.5 Da    PI: 10.0469
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019156135.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind365.21.2e-11113051301
       GAGA_bind   1 mdddgsrernkgyye.........pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllall 85 
                     mdd g   r+ g y+         ++ +s+     +q+m+++aerda+i+ernlalsekk+a++erdma lqrd+a+a+rn+a++erdn++++l+
  XP_019156135.1   1 MDDGGP--RENGRYKpplhgqwlmQHqPSM-----KQIMAIMAERDAAIQERNLALSEKKSALNERDMAILQRDSAIADRNNAIMERDNAIATLQ 88 
                     788877..5566666333333333222333.....5*********************************************************** PP

       GAGA_bind  86 lvensla....salpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak....kkkkkse 172
                     ++e+s++    s +p+g+q+ +  +++++           +a+  r+++ ++a p++ a +e  + +++k+ +++k +  +k++    k+kk+ +
  XP_019156135.1  89 YRETSMNtgsmSPSPPGCQITR--HHVHHQ----------TAYSSRDMHLSDAIPTSPADPEPAKPRRNKRAKEPKPATPRKTSkpskKAKKEAD 171
                     ****998764444555555544..333322..........3455555666666665554444444444433333322222222200013333333 PP

       GAGA_bind 173 kskkkvkkesader.......skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKm 260
                     + +++   +s+  +       s+ ++k++dl+ln+vs+D+st+PvPvCsCtG+lr CYkWGnGGWqS+CCtt++S+yPLP+ +++r+aRi+grKm
  XP_019156135.1 172 ELNRQIGGASD--DlnrqlgmSRPDWKDQDLGLNQVSFDDSTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYPLPAIPNKRHARIGGRKM 264
                     33333333333..04457777************************************************************************** PP

       GAGA_bind 261 SqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     S+gaf+kl+++LaaeG+dlsnpvDLk+hWAkHGtn+++ti+
  XP_019156135.1 265 SGGAFNKLISRLAAEGHDLSNPVDLKEHWAKHGTNRYITIK 305
                     ****************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MDDGGPRENG RYKPPLHGQW LMQHQPSMKQ IMAIMAERDA AIQERNLALS EKKSALNERD  60
MAILQRDSAI ADRNNAIMER DNAIATLQYR ETSMNTGSMS PSPPGCQITR HHVHHQTAYS  120
SRDMHLSDAI PTSPADPEPA KPRRNKRAKE PKPATPRKTS KPSKKAKKEA DELNRQIGGA  180
SDDLNRQLGM SRPDWKDQDL GLNQVSFDDS TMPVPVCSCT GVLRPCYKWG NGGWQSSCCT  240
TNLSMYPLPA IPNKRHARIG GRKMSGGAFN KLISRLAAEG HDLSNPVDLK EHWAKHGTNR  300
YITIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-136BBR-BPC family protein