PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019155968.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 968aa MW: 108253 Da PI: 8.4095

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019155968.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.2	8.7e-21	263	347	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA+++GFsvrk +++++ +++i +++f+Csk g+++++ k ++ trtgC a ++ +dg w vtk e+ HnHel+ XP_019155968.1 263 VYNSYAYTLGFSVRKGHQRYKGSSNTIQMKKFCCSKAGYKANSGVK----AYSKIDTRTGCGAFVQFDVGDDGLWTVTKHEKVHNHELC 347 7******************99999***********99877....8999*******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 968 aa Download sequence
MVVNKAIIGA HQYLAIVAFL HLFLSSIVLN TIEARDVRPL LKNFRSSYGS LTHRNNEGKY 60 SFVKVARSGP SPCGPGHACN SFVEVAQSKP SSPDARHDEG YNFIKDVQFQ PARYDQGYTL 120 TNVAQSVPSP PRGLGHGQGY TFAKVAQSGP SPRGAGHDQG YTFTNVAQSE PSPCGPGHDD 180 QSYTTLTKVT SSGPSYSHNT RHVPSYSFIE VAQSGPSPRG AGHDGISEGI VDGSVDVDGS 240 SSITVDQDLV GLVVSNADEA FEVYNSYAYT LGFSVRKGHQ RYKGSSNTIQ MKKFCCSKAG 300 YKANSGVKAY SKIDTRTGCG AFVQFDVGDD GLWTVTKHEK VHNHELCVFN KSHLLRSHRS 360 VGDNQLLYLQ GLKDSGVALA DGIRFLKHQS GGSPLVGFTS RDAYNSMAAD TVKRLDGTDS 420 NSLIEIFRRR QSTETDFFFD FELDLDARLC SFFWRDGQMR RDYEVFGDLL VHDTTYRTNK 480 YDMICAPFVG MNHHCMNVMF GCGFLMNERI ESFLWLFKVF SRSMGGKSPQ TIMTDQCAAM 540 AAAISKVFPT SRHRLCIWHI GENSKKHIKT LRSNKDFLDM FNYVLKYTET EAEFQFYWTR 600 LVTDYKCHKN TWLEKLYDCR EKWCPAFNKD YFSGGILSSQ RSETTNHSIS RRLSKTAGLC 660 DFYSSFVSVI SEWRSKENGE DFRCAQGVPA MMMEHVKLLS HAREVYTIEI YFLFEEQFMK 720 GSACHQEMVL NDGRQQKYHV WRPDIDIIRH EVSFNAANLD ISCSCKLMSE LGILCCHCIR 780 ILHVHCVSSI PDKYILKRWT KKVIDGRNVN IDSMVYNVGV PPSIWVFDIS RKFQRLVVSS 840 QDSSVARKLC DEAVDDVKKK VEAEVGHVHI EECGVSSSSG GVQNPSSRRL KGERNKRRSG 900 VIEKKYSLAR GRRSAANKAA LSTKGAVQSL VLENISKLAG DGYLVHPSSS SSDFVQFSKG 960 LDDNVGVD

Sequence ? help Back to Top

Protein Sequence Length: 968 aa Download sequence

MVVNKAIIGA HQYLAIVAFL HLFLSSIVLN TIEARDVRPL LKNFRSSYGS LTHRNNEGKY  60
SFVKVARSGP SPCGPGHACN SFVEVAQSKP SSPDARHDEG YNFIKDVQFQ PARYDQGYTL  120
TNVAQSVPSP PRGLGHGQGY TFAKVAQSGP SPRGAGHDQG YTFTNVAQSE PSPCGPGHDD  180
QSYTTLTKVT SSGPSYSHNT RHVPSYSFIE VAQSGPSPRG AGHDGISEGI VDGSVDVDGS  240
SSITVDQDLV GLVVSNADEA FEVYNSYAYT LGFSVRKGHQ RYKGSSNTIQ MKKFCCSKAG  300
YKANSGVKAY SKIDTRTGCG AFVQFDVGDD GLWTVTKHEK VHNHELCVFN KSHLLRSHRS  360
VGDNQLLYLQ GLKDSGVALA DGIRFLKHQS GGSPLVGFTS RDAYNSMAAD TVKRLDGTDS  420
NSLIEIFRRR QSTETDFFFD FELDLDARLC SFFWRDGQMR RDYEVFGDLL VHDTTYRTNK  480
YDMICAPFVG MNHHCMNVMF GCGFLMNERI ESFLWLFKVF SRSMGGKSPQ TIMTDQCAAM  540
AAAISKVFPT SRHRLCIWHI GENSKKHIKT LRSNKDFLDM FNYVLKYTET EAEFQFYWTR  600
LVTDYKCHKN TWLEKLYDCR EKWCPAFNKD YFSGGILSSQ RSETTNHSIS RRLSKTAGLC  660
DFYSSFVSVI SEWRSKENGE DFRCAQGVPA MMMEHVKLLS HAREVYTIEI YFLFEEQFMK  720
GSACHQEMVL NDGRQQKYHV WRPDIDIIRH EVSFNAANLD ISCSCKLMSE LGILCCHCIR  780
ILHVHCVSSI PDKYILKRWT KKVIDGRNVN IDSMVYNVGV PPSIWVFDIS RKFQRLVVSS  840
QDSSVARKLC DEAVDDVKKK VEAEVGHVHI EECGVSSSSG GVQNPSSRRL KGERNKRRSG  900
VIEKKYSLAR GRRSAANKAA LSTKGAVQSL VLENISKLAG DGYLVHPSSS SSDFVQFSKG  960
LDDNVGVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-79	FAR1 family protein