PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019155824.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 819aa    MW: 89984.2 Da    PI: 5.196
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019155824.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.91.1e-20101156156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  XP_019155824.1 101 KKRYHRHTAHQIQEMETLFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 156
                     688999***********************************************998 PP
2START146.23e-463025272206
                     HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     la + ++elvk+  a+ep+Wv      e+ ngde+ + f+  +        + ea ra +vv+m++ +lv  +ld + +W e ++    +a+t++
  XP_019155824.1 302 LAISSMDELVKMCRAGEPLWVCRNngrEMINGDEYSRLFQWPNKpplssdIRAEATRANAVVIMNSITLVDAFLDAG-KWMELFPsivaRAKTIQ 395
                     567899***************999999999*****999965444799999999************************.******99999****** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwveh 169
                     v+++g      g l+lm+aelqal+pl p R+ +f+Ry++q  ++g+w+ivd   ds q +   ss +   +++pSg++i++++ng+s+vtw+eh
  XP_019155824.1 396 VVMPGvpghasGSLHLMYAELQALTPLLPtRECYFLRYCQQnPEEGTWAIVDFPHDSLQINFPsSSCFPHFKRRPSGCIIQDMPNGYSRVTWIEH 490
                     *****************************************9999***********999876647778899************************ PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++++ + +++  lv sg a+ga++w+a lqrqce+
  XP_019155824.1 491 AEVEENPVNQIFSNLVASGEAFGARRWLAVLQRQCER 527
                     ***********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 819 aa     Download sequence    
MYGDCQVLSS MAGNGVPPPD SFFAPPQLGQ NPNFGFMSNI NMPFTIFPPI IPKEEGGLLM  60
KGKEGVESGS GSEHIEGLSG NEQETDQRRP AAEEQPPANK KKRYHRHTAH QIQEMETLFK  120
ECPHPDDKQR LKLSQDLGLK PRQVKFWFQN RRTQMKAQQD RSDNVVLRAE NDSLKTENYR  180
LQAALRNILC TNCGGPGILA DLSFDEQQLR MENARLKEEY ERMCCIFSQY TGRAVQPMGP  240
SPLLPAAPLD MDTAGGFPRK FEENMGSCED MVPVPFMAEN PQFAGGGGPF VGEEEKPLAM  300
DLAISSMDEL VKMCRAGEPL WVCRNNGREM INGDEYSRLF QWPNKPPLSS DIRAEATRAN  360
AVVIMNSITL VDAFLDAGKW MELFPSIVAR AKTIQVVMPG VPGHASGSLH LMYAELQALT  420
PLLPTRECYF LRYCQQNPEE GTWAIVDFPH DSLQINFPSS SCFPHFKRRP SGCIIQDMPN  480
GYSRVTWIEH AEVEENPVNQ IFSNLVASGE AFGARRWLAV LQRQCERVAS LMARNLSDLG  540
VIPSPEARKN MMNLAQRMIK IFCVNISTSM GQSWTSLSDS AEDTVRITTR KVTEPGQPAG  600
LILSAVSTTW LPYHHFQVFD LLRDERHRAQ LDALSNGNSL HEVAHIANGS HPGNCISLLR  660
INVASNSSQS VELMLQESCA DDSGSLVVYA TMDVDAIQLA MSGDDPSSVP LLPLGFVITP  720
MAAAATATAV QSSESGCLPE SGCLLTVALQ VLASTMPTAK LNLSSVTAIN HHLCNTVQQI  780
NAALSGLDDT AATTTAQPFP APPSPPPVKE TDDENHRSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0HD-ZIP family protein