PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019155745.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CAMTA

Protein Properties

Length: 967aa MW: 108082 Da PI: 6.2277

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019155745.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	172.4	6.3e-54	14	127	4	116
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 e + rwlk+ e++ iL+n+e+h++++e++++p sgsl+L+n++++r+frkDG+sw++k+dg+tv E+he+LKvg+ e+l+cyYah+e+np+fqrr XP_019155745.1 14 EaQGRWLKPAEVLFILQNHENHQIAHEPPQKPGSGSLFLFNKRVLRFFRKDGHSWRRKRDGRTVGEAHERLKVGSAEALNCYYAHGEQNPNFQRR 108 4489***************************************************************************************** PP CG-1 98 cywlLeeelekivlvhyle 116 +yw+L+ ++e+ivlvhy++ XP_019155745.1 109 SYWMLDPAYEHIVLVHYRD 127 ***************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 967 aa Download sequence
MTEAGYNFSD LIREAQGRWL KPAEVLFILQ NHENHQIAHE PPQKPGSGSL FLFNKRVLRF 60 FRKDGHSWRR KRDGRTVGEA HERLKVGSAE ALNCYYAHGE QNPNFQRRSY WMLDPAYEHI 120 VLVHYRDINE TQGRQTAGFM SQFSPVSSTS SQSPSPYSTQ YAGSSVIVNE SYEPYSSPGS 180 VEISSHAATT SNGISQSSIR EGVDEVSSSS AREMSLALRK LEEQLSLNDD SFKEIDPLYN 240 DIDNSDGVQN ILDDHSTFTR MPEDSNSLLL QQHSGYLSEQ NHQIPGFEVD PWNEALEGNG 300 NYLDSKLYGK YVYKDDKNML LAREPVETPE NMWFNFDGKE AQNHSITIPQ QVEDFKYPLY 360 SPAANTYRTD PIQYTTLFNQ GQIGISLEAD MGLTIAQKQK FTIKEISPDW GYATAATKVV 420 IIGSFLCDPS ESEWMCMFGD VEVPVQIIQE GVVRCQAPPH LPGKVNICIT TGNRESCSEV 480 REFEFRVEST SNINSTVPET QCTNKSPEEL LLLIRFGQML LSDGSNGKID SSGLGNDYLE 540 KVKASEDSWS QVIEALLVGS STPNLTIDWF LQELLKDKLQ QWIFSKSQGK TNSSDCMLSR 600 KEQGLIHMVA GLGFEWALHP ILNAGVSVNF RDIAGWTALH WAARFGREKM VAALIASGAS 660 AGAVTDPTKQ DPIGKTPAAI AANCGHKGLA GYLSEVALTS HLSSLTLEES ELSKGSADVE 720 AEKTIVSVST TGATTNEDEL SLKHTLAAVR NAAQAAARIQ SAFRAHSFRK RQQKEVVAFG 780 AGDEYYTLSN DIQGLSAASK LAFRSTRDYN SAALAIQKKY RGWKGRKDFL TFRQKVVKIQ 840 AHVRGYQVRK QYKVCWAVGV LEKVVLRWRR RGVGLRGFRH ETDSIDETED EDILKVFRKQ 900 KVDATIDEAV SRVLSMVESP TARQQYHRIL EKYRQAKAKL QGVETEATSS HDPSISSMEN 960 DNIYQFA

Sequence ? help Back to Top

Protein Sequence Length: 967 aa Download sequence

MTEAGYNFSD LIREAQGRWL KPAEVLFILQ NHENHQIAHE PPQKPGSGSL FLFNKRVLRF  60
FRKDGHSWRR KRDGRTVGEA HERLKVGSAE ALNCYYAHGE QNPNFQRRSY WMLDPAYEHI  120
VLVHYRDINE TQGRQTAGFM SQFSPVSSTS SQSPSPYSTQ YAGSSVIVNE SYEPYSSPGS  180
VEISSHAATT SNGISQSSIR EGVDEVSSSS AREMSLALRK LEEQLSLNDD SFKEIDPLYN  240
DIDNSDGVQN ILDDHSTFTR MPEDSNSLLL QQHSGYLSEQ NHQIPGFEVD PWNEALEGNG  300
NYLDSKLYGK YVYKDDKNML LAREPVETPE NMWFNFDGKE AQNHSITIPQ QVEDFKYPLY  360
SPAANTYRTD PIQYTTLFNQ GQIGISLEAD MGLTIAQKQK FTIKEISPDW GYATAATKVV  420
IIGSFLCDPS ESEWMCMFGD VEVPVQIIQE GVVRCQAPPH LPGKVNICIT TGNRESCSEV  480
REFEFRVEST SNINSTVPET QCTNKSPEEL LLLIRFGQML LSDGSNGKID SSGLGNDYLE  540
KVKASEDSWS QVIEALLVGS STPNLTIDWF LQELLKDKLQ QWIFSKSQGK TNSSDCMLSR  600
KEQGLIHMVA GLGFEWALHP ILNAGVSVNF RDIAGWTALH WAARFGREKM VAALIASGAS  660
AGAVTDPTKQ DPIGKTPAAI AANCGHKGLA GYLSEVALTS HLSSLTLEES ELSKGSADVE  720
AEKTIVSVST TGATTNEDEL SLKHTLAAVR NAAQAAARIQ SAFRAHSFRK RQQKEVVAFG  780
AGDEYYTLSN DIQGLSAASK LAFRSTRDYN SAALAIQKKY RGWKGRKDFL TFRQKVVKIQ  840
AHVRGYQVRK QYKVCWAVGV LEKVVLRWRR RGVGLRGFRH ETDSIDETED EDILKVFRKQ  900
KVDATIDEAV SRVLSMVESP TARQQYHRIL EKYRQAKAKL QGVETEATSS HDPSISSMEN  960
DNIYQFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	CAMTA family protein