PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019155719.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 814aa MW: 90736.2 Da PI: 7.6093

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019155719.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.1	4e-20	123	212	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA +vGF+ r+++ +k r+g ++++ vC+++g++++ ++ t+ +rr+r+++r+gCkak+++k++++g ++v+ +e+ H+H+++ XP_019155719.1 123 FYKQYAGTVGFDCRQHSIRKD-RDGVAVEKHVVCNRQGFKQRVSRVakTTLARRRRVTNRVGCKAKVVIKRKSNGLYVVHYFEERHTHSMC 212 9*********999888887.9999*********9987766558899***********************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 814 aa Download sequence
MWCAADVLQS GGICGEGSGG VCDNSTDVCG EGSGGVCDEG NPTDVGVECN GDGCDEGNVT 60 DVGVAGSGVG CDEDYLADVG VQGSVCVLET SPGLTKYWRP VCADSVKPIV GQQFVSLDGA 120 VVFYKQYAGT VGFDCRQHSI RKDRDGVAVE KHVVCNRQGF KQRVSRVAKT TLARRRRVTN 180 RVGCKAKVVI KRKSNGLYVV HYFEERHTHS MCSIIARQFL KVNRSLDAGH QMFIASCVRA 240 NIGSVRSYRL FKEIVGEYSS VGATGVDFKN FKRDLMAYIL NGDAQLFIDT LFKRRELCEA 300 FDFEYDVDEG DQLSRVFWAD AVSRKNFVLF GDVVSFDATY HTNRYKLVFV PFSGIDNHKR 360 SITFGAGLLT REDVDSYVWL LEKFKKIMCH DPICVVTDQD LALKVVVARV LGTSKHRFCM 420 WHIMCKVGEK VGPILSKDEV FRRKLNGTVW NKSLDSKSFE EAWSFIMEEY GLGDNGWFRY 480 LFESRTYWAS PYFHDEFMSG LVRTTSRSES QNSFFGTFSN GHSSLVEFLV HFGSAVGAQR 540 HAQAKLNADC ESCFPVLKTP LALEKHAMDV YTISVFYDVQ IEICAACYSC QVVSLCDCDG 600 HVLYGIKDGA QRAWYVELVL SDYTATCSCK MFERTGLLCR HIFFVFKDRG LESIPSRYVV 660 TRWTKGACLK PIFHIDDTIV DQSSKVENVR IFTNLLWSDI YACVGLADGN IERLSQLRRV 720 ICEQRQLFLQ EGSEDGSGVV AGGSKQSVIN SFCGDVSQGS TVEVRDPIQA KNKGSGKRLK 780 STREKAASKC VKQSRKCHTC DEYGHNSRTC PLNG

Sequence ? help Back to Top

Protein Sequence Length: 814 aa Download sequence

MWCAADVLQS GGICGEGSGG VCDNSTDVCG EGSGGVCDEG NPTDVGVECN GDGCDEGNVT  60
DVGVAGSGVG CDEDYLADVG VQGSVCVLET SPGLTKYWRP VCADSVKPIV GQQFVSLDGA  120
VVFYKQYAGT VGFDCRQHSI RKDRDGVAVE KHVVCNRQGF KQRVSRVAKT TLARRRRVTN  180
RVGCKAKVVI KRKSNGLYVV HYFEERHTHS MCSIIARQFL KVNRSLDAGH QMFIASCVRA  240
NIGSVRSYRL FKEIVGEYSS VGATGVDFKN FKRDLMAYIL NGDAQLFIDT LFKRRELCEA  300
FDFEYDVDEG DQLSRVFWAD AVSRKNFVLF GDVVSFDATY HTNRYKLVFV PFSGIDNHKR  360
SITFGAGLLT REDVDSYVWL LEKFKKIMCH DPICVVTDQD LALKVVVARV LGTSKHRFCM  420
WHIMCKVGEK VGPILSKDEV FRRKLNGTVW NKSLDSKSFE EAWSFIMEEY GLGDNGWFRY  480
LFESRTYWAS PYFHDEFMSG LVRTTSRSES QNSFFGTFSN GHSSLVEFLV HFGSAVGAQR  540
HAQAKLNADC ESCFPVLKTP LALEKHAMDV YTISVFYDVQ IEICAACYSC QVVSLCDCDG  600
HVLYGIKDGA QRAWYVELVL SDYTATCSCK MFERTGLLCR HIFFVFKDRG LESIPSRYVV  660
TRWTKGACLK PIFHIDDTIV DQSSKVENVR IFTNLLWSDI YACVGLADGN IERLSQLRRV  720
ICEQRQLFLQ EGSEDGSGVV AGGSKQSVIN SFCGDVSQGS TVEVRDPIQA KNKGSGKRLK  780
STREKAASKC VKQSRKCHTC DEYGHNSRTC PLNG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-95	FAR1 family protein