PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019155581.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NF-YC

Protein Properties

Length: 280aa MW: 31185.3 Da PI: 4.708

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019155581.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	60.8	2.8e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki+++ded+ +i+ +P l+ska elf+ +l r++ + + +tl+ ++++v+ ++fdfl d+v r XP_019155581.1 6 DTRFPAARIKKIMQTDEDIGKIANAVPLLVSKALELFLQDLCDRTYDITLKRGAKTLNSYHLKQCVQTCNVFDFLKDVVSR 86 5789**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MKKKLDTRFP AARIKKIMQT DEDIGKIANA VPLLVSKALE LFLQDLCDRT YDITLKRGAK 60 TLNSYHLKQC VQTCNVFDFL KDVVSRVPDL GVSDGDDRSA AKRRKIAEAD DHYSDDDIKR 120 SDMLQHETTP SSSSGRGRGR GRGRGRGRGR AVDREQTTLY EKFEDAADQR DEKQKKRNSE 180 RLDSGSETAD SKISLAGQSL EATVRNFDLN VDLNDETGDS SAVPAEAPSP SPTVPSVETK 240 HEEEYPGWSD VEGMAIDPIQ LANLNRTTTD EVEEDYDEEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	145	RGRGRGRGRG
2	136	146	RGRGRGRGRGR
3	138	147	RGRGRGRGRG
4	138	148	RGRGRGRGRGR
5	140	149	RGRGRGRGRG
6	140	150	RGRGRGRGRGR
7	142	151	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	2e-59	NF-YC family protein