PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019155441.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YA
Protein Properties Length: 308aa    MW: 33257.9 Da    PI: 7.9706
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019155441.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.92.9e-32168224158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RR++Rak+e +kkl +k rkpylheSRh+hAlrR+RgsgGrF
  XP_019155441.1 168 QEPVYVNAKQYHGILRRRESRAKAELQKKL-IKVRKPYLHESRHQHALRRARGSGGRF 224
                     69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MQPNSKTANL VGANPHNIPH SADSAEPWWK TAGYNSVPPG MVQGDASDSS SLEQSLDDQS  60
QSDGGVNPEG DDGTEKSQTS KPSLQGSCGG QVDKNLQQVA SVIPDGSDEH LTQPQQLEFV  120
GHSIACAPNP YIDPYFGQMI AAYGQPLVPP DILDMHRMRM PLPLEMTQEP VYVNAKQYHG  180
ILRRRESRAK AELQKKLIKV RKPYLHESRH QHALRRARGS GGRFVKKSDS NAPKQTGSGG  240
SLSPRSLTLP GPESFPSGAS NNCQEAVPKP HLHQYINSGG SYGSRCCSQE SLYHVHSAES  300
SGGGSTRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.21e-53NF-YA family protein