PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019155437.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YA
Protein Properties Length: 335aa    MW: 36386.6 Da    PI: 8.4745
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019155437.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.83.3e-32195251158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RR++Rak+e +kkl +k rkpylheSRh+hAlrR+RgsgGrF
  XP_019155437.1 195 QEPVYVNAKQYHGILRRRESRAKAELQKKL-IKVRKPYLHESRHQHALRRARGSGGRF 251
                     69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MKCRQFLASS VIGHSEIWFS FSKCIKIMQP NSKTANLVGA NPHNIPHSAD SAEPWWKTAG  60
YNSVPPGMVQ GDASDSSSLE QSLDDQSQSD GGVNPEGDDG TEKSQTSKPS LQGSCGGQVD  120
KNLQQVASVI PDGSDEHLTQ PQQLEFVGHS IACAPNPYID PYFGQMIAAY GQPLVPPDIL  180
DMHRMRMPLP LEMTQEPVYV NAKQYHGILR RRESRAKAEL QKKLIKVRKP YLHESRHQHA  240
LRRARGSGGR FVKKSDSNAP KQTGSGGSLS PRSLTLPGPE SFPSGASNNC QEAVPKPHLH  300
QYINSGGSYG SRCCSQESLY HVHSAESSGG GSTRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.22e-53NF-YA family protein