PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019155292.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 373aa MW: 41266.4 Da PI: 8.4627

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019155292.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.4	3.4e-18	136	182	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd ll+++v+++G ++W+ Ia ++ gR +kqc++rw+++l XP_019155292.1 136 KGQWTEEEDRLLIRLVNEHGDRRWSVIATKIV-GRAGKQCRERWHNHL 182 799***************************.***********97 PP
2	Myb_DNA-binding	47.1	5.4e-15	188	230	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W + ++ llv +++qlG++ W+ Ia++++ gR+++++k++w+ XP_019155292.1 188 KESWNEGDERLLVAVHEQLGNR-WSEIAKRIP-GRSENSIKNHWN 230 568*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MDGSGGGGGY RPFSVNFPNP ILPPFPPVIV HQRYNHQEIL PFPESFGSSS FHGGASSTNS 60 LLPAADAATA SWLSHLQNVN FGGSRGSFPH GLVAPPPASW GNQNPEMMSA AGSPEETRRE 120 KGHDERRSSN GVAFIKGQWT EEEDRLLIRL VNEHGDRRWS VIATKIVGRA GKQCRERWHN 180 HLRPDIKKES WNEGDERLLV AVHEQLGNRW SEIAKRIPGR SENSIKNHWN ATKRRLFSKR 240 RMRSSSLQDA GSSRAGGRRS SVVLQNYIKY KYFSGLSLGQ PGSSLVPEQP SIQQQVNVDD 300 SPSILTETYD DEMNFMQKLF GNSSSSSTSP TAANNGSRSD NSAEFAAFGQ RTNEVDSVPE 360 EESWSTYLAS DPN

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MDGSGGGGGY RPFSVNFPNP ILPPFPPVIV HQRYNHQEIL PFPESFGSSS FHGGASSTNS  60
LLPAADAATA SWLSHLQNVN FGGSRGSFPH GLVAPPPASW GNQNPEMMSA AGSPEETRRE  120
KGHDERRSSN GVAFIKGQWT EEEDRLLIRL VNEHGDRRWS VIATKIVGRA GKQCRERWHN  180
HLRPDIKKES WNEGDERLLV AVHEQLGNRW SEIAKRIPGR SENSIKNHWN ATKRRLFSKR  240
RMRSSSLQDA GSSRAGGRRS SVVLQNYIKY KYFSGLSLGQ PGSSLVPEQP SIQQQVNVDD  300
SPSILTETYD DEMNFMQKLF GNSSSSSTSP TAANNGSRSD NSAEFAAFGQ RTNEVDSVPE  360
EESWSTYLAS DPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	2e-57	MYB family protein