PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_019155290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 484aa MW: 52700.1 Da PI: 8.2388 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.9 | 4.9e-18 | 136 | 182 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd ll+++v+++G ++W+ Ia ++ gR +kqc++rw+++l XP_019155290.1 136 KGQWTEEEDRLLIRLVNEHGDRRWSVIATKIV-GRAGKQCRERWHNHL 182 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 51 | 3.4e-16 | 188 | 230 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W++ ++ llv++++qlG++ W+ Ia++++ gR+++++k++w+ XP_019155290.1 188 KESWSERDERLLVQVHEQLGNR-WSEIAKRIP-GRSENSIKNHWN 230 578*******************.*********.***********8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 484 aa Download sequence |
MDGSGGGGGY RSFSVNFPNP ILPPFPPVIV HRRYNHQEIL PFPERFGSSS FHGSASSTNS 60 LLPAADAATA SWLSHLQNVN FGGSRGSFPH GLVAPPPASW GNQNPEMMSA AGSPEETRRE 120 KGHDERRSSN GVAFIKGQWT EEEDRLLIRL VNEHGDRRWS VIATKIVGRA GKQCRERWHN 180 HLRPDIKKES WSERDERLLV QVHEQLGNRW SEIAKRIPGR SENSIKNHWN ATKRRQFSKR 240 RMRSSSLQDA GSSRAGGRRR SVVLENYIKF KYFSGLSLGQ PGTSLVPEQP SIQQQVNVDI 300 PPPQPLPPAA AAAAAAAGDE QDSRDSPSIL TETYDDEVNF MQKLFGNSSS SSTSPTAANN 360 GSRSNNTAEF AAFGWRTNEV DSVPEEDSWS TYLASDPNLY EMGGADQINS STPQAPAANN 420 TNSGAGYGSA AASHCGAPPL NRWSSSATAA AMDMDLMDLV SAASSSRCPH GYGSCCTKTP 480 RQMF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58850.1 | 5e-55 | MYB family protein |