PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019155088.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C3H | ||||||||
Protein Properties | Length: 453aa MW: 50209 Da PI: 7.9506 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.4e-11 | 101 | 125 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++ t tCk+Gd+CkF H+ XP_019155088.1 101 GEKDCSHYMLTRTCKFGDSCKFDHP 125 7889********************8 PP | |||||||
2 | zf-CCCH | 34.6 | 3.2e-11 | 150 | 176 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++++t CkyG rC+F+H++ XP_019155088.1 150 PGEPDCPYYLKTQKCKYGIRCRFNHPK 176 5789*********************96 PP | |||||||
3 | zf-CCCH | 40 | 6.3e-13 | 195 | 219 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC f+++tG Ck+G++CkF+H++ XP_019155088.1 195 EPLCAFYMKTGKCKFGSTCKFHHPK 219 79*********************96 PP | |||||||
4 | zf-CCCH | 38.5 | 2e-12 | 269 | 292 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ XP_019155088.1 269 EVDCPFYLKTGSCKYGATCRYNHP 292 689********************9 PP | |||||||
5 | zf-CCCH | 42.8 | 8.4e-14 | 339 | 364 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+f+++tG+Ck+G+rC+F+H+ XP_019155088.1 339 PGQVECDFYMKTGECKFGERCRFHHP 364 5789*********************9 PP | |||||||
6 | zf-CCCH | 36.2 | 1e-11 | 398 | 419 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tG+Ck+G++CkF H+p XP_019155088.1 398 CPYYMKTGICKFGATCKFDHPP 419 ********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence |
MLFNRTNNSF SSAGTRIPTA PQLASQSSWS GPPGVDIGPA VADPFLSGLK RPSSEALYHQ 60 TVLGGHSTVG QTESWFSSNP LAKRPRFETA CNLPIYPQRP GEKDCSHYML TRTCKFGDSC 120 KFDHPIWVPE GGIPDWKEVL ITSESLPVRP GEPDCPYYLK TQKCKYGIRC RFNHPKVKDA 180 FENTDVPVLP ERPSEPLCAF YMKTGKCKFG STCKFHHPKD IQIQASAQEN GSTLETGLID 240 NNEMIGDVKQ TVSPAMLHNS KGLPIRLGEV DCPFYLKTGS CKYGATCRYN HPDRYTINPP 300 AAHLNVGVVN PTASLFQTFD PRLTQTMFGF ATTIYPQRPG QVECDFYMKT GECKFGERCR 360 FHHPLDHSLS VTSSMEGEQQ NFKLSLAGLP RREGAIHCPY YMKTGICKFG ATCKFDHPPP 420 GELIGGTSQV TSTSVGEEEG YAKLVEAIQK QQQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 0.0 | C3H family protein |