PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019155077.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 733aa MW: 83877.6 Da PI: 8.8432

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019155077.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.4	2.1e-22	44	136	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA vGF+vr+s k++ r g+i+k++ vCs+eg++e+++k+ t+k++r+r+++r+gC a+l+++++k+gk++v++++ H+H l+ XP_019155077.1 44 FYTTYAGIVGFDVRRSFDKRN-RYGQIKKKQVVCSREGFKETKNKEtieeeTTKQKRRRTTNRVGCPARLVLTLNKEGKYVVKTFVDRHTHVLC 136 9*************99988.7778*************99999999999999**********************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence
MDNGGTGVMD VSPGGTHTWI PECDASVNPF EGQEFDTMED GITFYTTYAG IVGFDVRRSF 60 DKRNRYGQIK KKQVVCSREG FKETKNKETI EEETTKQKRR RTTNRVGCPA RLVLTLNKEG 120 KYVVKTFVDR HTHVLCEEKY KRFMKVNRKI DIGHQEFITN CGKVNVGASK SFDIYAEMVG 180 GPENVGATQQ DFKNYRRELL AYMKEKDIQM VISQYLEKKN DCVDMYFEYD VNEKDQLARV 240 FWADRRARLH YGAFGDVVSF DATYKTNRYN LVFVPFTGID NHKRCVTFAA GLIDKEDVES 300 YSWILRNFKN AMGSTPPIVI NDQDPAMKVA IETEFLGTRH RYCMWHIMTK VGDKVGNTLA 360 KNEEFRRALN AVVWNEESTT IGFESAWNAV IQKYGLLENR WLKRMYDEHA SWVPPFFDDV 420 FMGGLLRTTS RSEAENRIFQ SNTNKHLCLV EFFKRFESAV RKQRDKHLEL SAACTGQTPP 480 LKTLLRIERE AAMVYTLTVF SDVQKEICEG WSTCRVRSYT EAEGVKTYVV EDGTNKRYTV 540 IVEDGSNNTS CTCRLYTKIG LLCRHVFVVL KDERIDHIPP QHITPRWTKE AVKNIEKGTG 600 VGRQIWANNN GHNTTVEGKV INTIYRCLGM ARGNGEKMQH ITNVIEELEA TLCDKEVNRA 660 EGNTKRAVME AYCGVPEPDT IKVHPPEVAK TKGSGKRMKS AKEVAIIEQL KKKRTCKTCG 720 LAAGHNSRSC PQK

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence

MDNGGTGVMD VSPGGTHTWI PECDASVNPF EGQEFDTMED GITFYTTYAG IVGFDVRRSF  60
DKRNRYGQIK KKQVVCSREG FKETKNKETI EEETTKQKRR RTTNRVGCPA RLVLTLNKEG  120
KYVVKTFVDR HTHVLCEEKY KRFMKVNRKI DIGHQEFITN CGKVNVGASK SFDIYAEMVG  180
GPENVGATQQ DFKNYRRELL AYMKEKDIQM VISQYLEKKN DCVDMYFEYD VNEKDQLARV  240
FWADRRARLH YGAFGDVVSF DATYKTNRYN LVFVPFTGID NHKRCVTFAA GLIDKEDVES  300
YSWILRNFKN AMGSTPPIVI NDQDPAMKVA IETEFLGTRH RYCMWHIMTK VGDKVGNTLA  360
KNEEFRRALN AVVWNEESTT IGFESAWNAV IQKYGLLENR WLKRMYDEHA SWVPPFFDDV  420
FMGGLLRTTS RSEAENRIFQ SNTNKHLCLV EFFKRFESAV RKQRDKHLEL SAACTGQTPP  480
LKTLLRIERE AAMVYTLTVF SDVQKEICEG WSTCRVRSYT EAEGVKTYVV EDGTNKRYTV  540
IVEDGSNNTS CTCRLYTKIG LLCRHVFVVL KDERIDHIPP QHITPRWTKE AVKNIEKGTG  600
VGRQIWANNN GHNTTVEGKV INTIYRCLGM ARGNGEKMQH ITNVIEELEA TLCDKEVNRA  660
EGNTKRAVME AYCGVPEPDT IKVHPPEVAK TKGSGKRMKS AKEVAIIEQL KKKRTCKTCG  720
LAAGHNSRSC PQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-84	FAR1 family protein