PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019155008.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CPP

Protein Properties

Length: 802aa MW: 87080.2 Da PI: 6.5494

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019155008.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.5	4.2e-16	511	547	3	39
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 +k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk XP_019155008.1 511 CKRCNCKKSKCLKLYCECFAAGVYCVEPCSCQDCFNK 547 89**********************************8 PP
2	TCR	51.1	2.7e-16	590	628	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN XP_019155008.1 590 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 628 589***********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 802 aa Download sequence
MGGVEANMES ENAERKSSGS EVGGSEEGGP AVMDTPDRTK INQIVTPLSK IEESPVFNFL 60 NSLSPIEPVK SVHITQTFNP LNFSSPPSVF TSPHLSMLKE SRFLRRHQLP DPSKPEFSSD 120 NDHKVNSSQV HNLDVSGNTS EQPESYLGSC TIEASIRASY EFSKLAVELV KSLDYDCSSP 180 NSSPVTNCDF KDKSFSALAG SSDTIVPVVH DVPGKKCSLR SQVKMEGASQ IDRNEEDSGC 240 DFEGLISGTG DALIFDSPND TGTIKKEVDP ISRTYSFGRN EIQNIKTFSA VGSGEKVEEI 300 IETENQSTQS GEGSELNQYA EVQDRNPDSS VCTKSLVGCT NEKMEADMVS GFNRGIRRRC 360 LVFDMTGIRK KHLDENTGSD SGSSLWTQSD GNTTSTDKHL VGTKSRREPS RCILPGIGLH 420 LNALAVAAKD GHAVKHEALA SGHQLLVAPG SAANYRSLTL TSKARVALED GIHLNEDANQ 480 SPGCSVNEEL NQSSSPRKKK RRMESGESEG CKRCNCKKSK CLKLYCECFA AGVYCVEPCS 540 CQDCFNKPIY EDTVIATRKQ IESRNPLAFA PKVIRATETL AEIGTPASAR HKRGCNCKKS 600 GCLKKYCECY QGGVGCSINC RCEGCKNAFG RKDGTEAELE EEETDVHEKS SIDESSQKSA 660 FQTEIEQIPD SFLPATPLRS KRPPMQPLVS LKNKPTRMPS ILGVGSSSGG TYAASQGLGR 720 PTFFRPLPKF HKQFESIEED EIPSELQGNT SPTSGIVKST SPNSKRVSPP HTELGTSPSR 780 RSSSRKLILQ SIPSFPSLTP NN

Sequence ? help Back to Top

Protein Sequence Length: 802 aa Download sequence

MGGVEANMES ENAERKSSGS EVGGSEEGGP AVMDTPDRTK INQIVTPLSK IEESPVFNFL  60
NSLSPIEPVK SVHITQTFNP LNFSSPPSVF TSPHLSMLKE SRFLRRHQLP DPSKPEFSSD  120
NDHKVNSSQV HNLDVSGNTS EQPESYLGSC TIEASIRASY EFSKLAVELV KSLDYDCSSP  180
NSSPVTNCDF KDKSFSALAG SSDTIVPVVH DVPGKKCSLR SQVKMEGASQ IDRNEEDSGC  240
DFEGLISGTG DALIFDSPND TGTIKKEVDP ISRTYSFGRN EIQNIKTFSA VGSGEKVEEI  300
IETENQSTQS GEGSELNQYA EVQDRNPDSS VCTKSLVGCT NEKMEADMVS GFNRGIRRRC  360
LVFDMTGIRK KHLDENTGSD SGSSLWTQSD GNTTSTDKHL VGTKSRREPS RCILPGIGLH  420
LNALAVAAKD GHAVKHEALA SGHQLLVAPG SAANYRSLTL TSKARVALED GIHLNEDANQ  480
SPGCSVNEEL NQSSSPRKKK RRMESGESEG CKRCNCKKSK CLKLYCECFA AGVYCVEPCS  540
CQDCFNKPIY EDTVIATRKQ IESRNPLAFA PKVIRATETL AEIGTPASAR HKRGCNCKKS  600
GCLKKYCECY QGGVGCSINC RCEGCKNAFG RKDGTEAELE EEETDVHEKS SIDESSQKSA  660
FQTEIEQIPD SFLPATPLRS KRPPMQPLVS LKNKPTRMPS ILGVGSSSGG TYAASQGLGR  720
PTFFRPLPKF HKQFESIEED EIPSELQGNT SPTSGIVKST SPNSKRVSPP HTELGTSPSR  780
RSSSRKLILQ SIPSFPSLTP NN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	498	502	KKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	1e-141	CPP family protein