PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019154975.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 439aa MW: 49352.2 Da PI: 6.458

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019154975.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	73.7	3.1e-23	96	203	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.ts 73 +Wt+++v++Li ++ +++++++++ +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++++ +k+ ++ XP_019154975.1 96 KWTDNMVRLLIMVVYYIGDEVGSEGnindpagnkkkaaggggggvmQKKGKWKSVSRAMMERGFYVSPQQCEDKFNDLNKRYKRVNDIIGKGtAC 190 7************999999965337778888999999999************************************************559 PP trihelix 74 essstcpyfdqle 86 +++++ +++ l+ XP_019154975.1 191 KVVENQTLLETLD 203 9999999888875 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
MESNGMYSNM GSGMLGLEMS LHHVPPQQNP HPMQHQSHPP MVSWPGGGGG TYPSGNKPKP 60 TPGLTLSDDN DPGGPTADQN SVDDGKRKMC PWQRMKWTDN MVRLLIMVVY YIGDEVGSEG 120 NINDPAGNKK KAAGGGGGGV MQKKGKWKSV SRAMMERGFY VSPQQCEDKF NDLNKRYKRV 180 NDIIGKGTAC KVVENQTLLE TLDLSPKMKE EAKKLLNSKH LFFREMCAYH NSCAHGGASG 240 STAADGGSDP TSQANNPHQK CMHSSENVRI GPNLAPAEVE GLKIDNDDDE DSDDDEEYEE 300 DEEDSSIDEK SRKKARKTES WSAMVLQQLS GELRNMCEDS TRSPVEKRRW IKARTMQLEE 360 QRVEYESEAL ELEKQRVKWE KFSSKKEREM EREKMMNQRK KLENDRMVLL LHQKELELKN 420 GVHHQASYNR TSDPSSVTG

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

MESNGMYSNM GSGMLGLEMS LHHVPPQQNP HPMQHQSHPP MVSWPGGGGG TYPSGNKPKP  60
TPGLTLSDDN DPGGPTADQN SVDDGKRKMC PWQRMKWTDN MVRLLIMVVY YIGDEVGSEG  120
NINDPAGNKK KAAGGGGGGV MQKKGKWKSV SRAMMERGFY VSPQQCEDKF NDLNKRYKRV  180
NDIIGKGTAC KVVENQTLLE TLDLSPKMKE EAKKLLNSKH LFFREMCAYH NSCAHGGASG  240
STAADGGSDP TSQANNPHQK CMHSSENVRI GPNLAPAEVE GLKIDNDDDE DSDDDEEYEE  300
DEEDSSIDEK SRKKARKTES WSAMVLQQLS GELRNMCEDS TRSPVEKRRW IKARTMQLEE  360
QRVEYESEAL ELEKQRVKWE KFSSKKEREM EREKMMNQRK KLENDRMVLL LHQKELELKN  420
GVHHQASYNR TSDPSSVTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	7e-79	Trihelix family protein