PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019154781.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 293aa    MW: 31851 Da    PI: 5.0013
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019154781.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00097266289123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     + C+ C+++F +   L +H +  H
  XP_019154781.1 266 HACKSCNRTFGSEGALDSHTKAkH 289
                     67*****************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MEFWGVEVKS GEPLSVKPGD GMILHLSQAN VGEVKKLHGS ESVCLFVNVD GKKLVLGTLI  60
SDKLPQQQFD LIFDKDFELS HNWKNGNVYF YGFKAQNPVA DDDDDQESDS DEDSPLTFKE  120
PETVVKPEKQ AGSEKSDVAK SSAPDKKVKI KEPHKDAKAK EDESSDEDMG SDDDDLSDED  180
MDSSDGEDED ESDETPKKVE SGKKRLAESA KKTPASDKNK KAKMETPQKT GGKKSSVHVA  240
TPYPSKQAKT AANKPNQSTP KSAGSHACKS CNRTFGSEGA LDSHTKAKHS SGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.26e-33C2H2 family protein