PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019154334.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 293aa    MW: 33062.8 Da    PI: 8.6591
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019154334.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.51.1e-2356150190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     +fY +YA+ +GF+vr+s+ kk+ r g i ++++vCs+eg++e++++        +k+rr+r++tr+gC a+++ k++k g+++vt++e+ H+H l
  XP_019154334.1  56 EFYMKYASIAGFDVRRSSDKKN-RYGAILRKKMVCSREGFKETKTTGpavsdaPTKARRRRPSTRVGCMARIVFKQDKAGRYVVTTFEEAHTHCL 149
                     6****************99998.7888****************99989***99999*************************************99 PP

            FAR1  90 a 90 
                     +
  XP_019154334.1 150 C 150
                     8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MASGSEGPLP MEDDAGRREC VMDVSPGSNE TWLTECDPNI KPTQGQLFKN LDDGIEFYMK  60
YASIAGFDVR RSSDKKNRYG AILRKKMVCS REGFKETKTT GPAVSDAPTK ARRRRPSTRV  120
GCMARIVFKQ DKAGRYVVTT FEEAHTHCLC EESYKPFLKV NRKLDVGHQQ FITNCSKVNV  180
GASKSFDIYA EMVGGVENVG CTQQDFKNYR REVLAYMQGR DAQMVISKYL DIKSDYSDMY  240
SLVFVPFTGV DNHKKCVTFA VALIAREDVD SYCWALRNFK IAMGSIPRIT VTD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-22FAR1 family protein