PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019154281.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 721aa MW: 80363.3 Da PI: 9.8114

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019154281.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.7	8.1e-11	17	69	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 rW t+E++ll+ av+++G+++W+++a +++ +++++c++++++++ XP_019154281.1 17 RWGTWEELLLAGAVNRHGTKSWESVADELQkrssvptMLLSPESCRLKYLDLK 69 8********************************99679*******9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence
MAKSDGTADN TPEKEARWGT WEELLLAGAV NRHGTKSWES VADELQKRSS VPTMLLSPES 60 CRLKYLDLKR RFSSGEVNGV DDECGERTET AVPLLEELRK LRVAELRREV ERYDLSIVSL 120 QLKVKTLTEE RDRSLREDEK SDPAMSENQE IRCVEKNEGG VEITPESDAG EPVTGDKDQQ 180 SMNESNSTDQ KDANARTGTK DDGKHLEAIQ TGNVEDEPDK VKEGKPGRED SCNCSSNSVE 240 KEPVHEVVKT EPVTDSTELL ESVAESKGNE EEGTKENSDV QSSASKSRKT GDADRANRRS 300 SSRDERANTN ESPAVKEMPV EFQPLINFLE KIESNKHYSL FMRRLESQET EDYKLLIRQH 360 IDLEMVRAWV EEGRYLVCKV KFFRDLLLLA NNAIIFFRKN TSEFLAAMEL RQLVSNELPR 420 AKLYSSSVKQ KSIKLVSLTK EENSKPADSL LLKTKQSGSL VVCRKRSSIT PKSSGSSSGV 480 DKRREQIARR PDHNPVTNSK QQPSQTVTNS GENRITKKRT RDRFSSASTT SRRNEKNSST 540 TIPTKNSAPV VEKPQGKRER DPSPQNHQSK NENTNDKSST DLKKRSAANF LNRMKQGSSS 600 NSGSLLDALK STPLSGDSKG GGYEKKRNET GRKEAVSSKP PEATQQTKEK GKSSGRKEAV 660 SSKPPPEATQ QTKEKGSLSK KSSGRPPKRG AAPSPQSSKR NLDVDHSESL ASKQPKKRAR 720 R

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence

MAKSDGTADN TPEKEARWGT WEELLLAGAV NRHGTKSWES VADELQKRSS VPTMLLSPES  60
CRLKYLDLKR RFSSGEVNGV DDECGERTET AVPLLEELRK LRVAELRREV ERYDLSIVSL  120
QLKVKTLTEE RDRSLREDEK SDPAMSENQE IRCVEKNEGG VEITPESDAG EPVTGDKDQQ  180
SMNESNSTDQ KDANARTGTK DDGKHLEAIQ TGNVEDEPDK VKEGKPGRED SCNCSSNSVE  240
KEPVHEVVKT EPVTDSTELL ESVAESKGNE EEGTKENSDV QSSASKSRKT GDADRANRRS  300
SSRDERANTN ESPAVKEMPV EFQPLINFLE KIESNKHYSL FMRRLESQET EDYKLLIRQH  360
IDLEMVRAWV EEGRYLVCKV KFFRDLLLLA NNAIIFFRKN TSEFLAAMEL RQLVSNELPR  420
AKLYSSSVKQ KSIKLVSLTK EENSKPADSL LLKTKQSGSL VVCRKRSSIT PKSSGSSSGV  480
DKRREQIARR PDHNPVTNSK QQPSQTVTNS GENRITKKRT RDRFSSASTT SRRNEKNSST  540
TIPTKNSAPV VEKPQGKRER DPSPQNHQSK NENTNDKSST DLKKRSAANF LNRMKQGSSS  600
NSGSLLDALK STPLSGDSKG GGYEKKRNET GRKEAVSSKP PEATQQTKEK GKSSGRKEAV  660
SSKPPPEATQ QTKEKGSLSK KSSGRPPKRG AAPSPQSSKR NLDVDHSESL ASKQPKKRAR  720
R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	7e-69	MYB_related family protein