PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019154239.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 319aa    MW: 36415.9 Da    PI: 5.2436
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019154239.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.6e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+++++ +G g+W++++++ g+ R++k+c++rw +yl
   XP_019154239.1 14 KGLWSPEEDEKLYNYITNFGVGCWSSVPKHAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding48.81.7e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +++eE++l++ +++ lG++ W+ Ia++++ gRt++++k++w++
   XP_019154239.1  67 RGMFSQEEEDLILSLHEVLGNR-WAQIAAKLP-GRTDNEIKNFWNS 110
                      788*******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MGRHSCMVKQ KLRKGLWSPE EDEKLYNYIT NFGVGCWSSV PKHAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQEEEDLILS LHEVLGNRWA QIAAKLPGRT DNEIKNFWNS CLKKKLIKQG  120
IDPNTHKPMA ETQDNPKNSS TLPSGPNELP TFPTTPQMEP SKLPFMTTKQ VFDPLFLYEP  180
QENLITFPSA CSYLNPTTYG FSSLPGLMNF DTNAQMTETD YFSDGSNSRM GSSNSSNNIG  240
TTQMNNNNME NGSRFSWEVG NRMETLFDQY GFNNGEMIIK PEEEEEEERQ LIEAHCHDYT  300
LTSLPQDLGG PNLDVFHQL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-77MYB family protein