PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019154218.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 461aa MW: 50372.7 Da PI: 6.5215

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019154218.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.8	8.1e-13	296	341	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ +++Ka+ L Av YI++L XP_019154218.1 296 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVSYINEL 341 799*********************6.....4*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MDELIVTSSS SSSITASLSQ PNHSTLQQRL QFILKTQTDS WAYAIFWQTS NDDDGRLFLA 60 WGDGFFQGTK AGRGGGVPVV VQTSHSTQQS ERKKVISGIQ ALIGSTQNSE NGDLITDAEW 120 FYVMSLARSF SAGDGVPGKA FSMGSLVWLS GAHRLQMYNC ERAKEAQIHG IQTLVCIPTG 180 AGVVELGSLE IIKENWSLVQ QVKSLFQFPE ERTISFADIG LVSGHELLQQ GRSGDAEKQA 240 QEASAAAAAA KNSYPESEHS DSDCQFLKEP PIVDRQQNAP KKRGRKPGAG RVTPVNHVEA 300 ERQRREKLNH RFYALRSVVP NVSRMDKASL LSDAVSYINE LKGKVEELEC QLQLRESKKV 360 KVEAVGDNQS TSSAASSVAS PVDVEVKIVG PDAMIRVQSE NANYPSAKLM NGLRELELAV 420 HHASISSVND IMLQDIVVKV PEGLRSEDGL RAALLRRLDQ L

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MDELIVTSSS SSSITASLSQ PNHSTLQQRL QFILKTQTDS WAYAIFWQTS NDDDGRLFLA  60
WGDGFFQGTK AGRGGGVPVV VQTSHSTQQS ERKKVISGIQ ALIGSTQNSE NGDLITDAEW  120
FYVMSLARSF SAGDGVPGKA FSMGSLVWLS GAHRLQMYNC ERAKEAQIHG IQTLVCIPTG  180
AGVVELGSLE IIKENWSLVQ QVKSLFQFPE ERTISFADIG LVSGHELLQQ GRSGDAEKQA  240
QEASAAAAAA KNSYPESEHS DSDCQFLKEP PIVDRQQNAP KKRGRKPGAG RVTPVNHVEA  300
ERQRREKLNH RFYALRSVVP NVSRMDKASL LSDAVSYINE LKGKVEELEC QLQLRESKKV  360
KVEAVGDNQS TSSAASSVAS PVDVEVKIVG PDAMIRVQSE NANYPSAKLM NGLRELELAV  420
HHASISSVND IMLQDIVVKV PEGLRSEDGL RAALLRRLDQ L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	3e-78	bHLH family protein