PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019154215.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 475aa MW: 51769.3 Da PI: 6.5223

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019154215.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.8	8.4e-13	310	355	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ +++Ka+ L Av YI++L XP_019154215.1 310 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVSYINEL 355 799*********************6.....4*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MDELIVTSSS SSSITASLSQ PNHSTLQQRL QFILKTQTDS WAYAIFWQTS NDDDGRLFLA 60 WGDGFFQGTK AGRGGGVPVV VQTSHSTQQS ERKKVISGIQ ALIGSTQNSE NGDLITDAEW 120 FYVMSLARSF SAGDGVPGKA FSMGSLVWLS GAHRLQMYNC ERAKEAQIHG IQTLVCIPTG 180 AGVVELGSLE IIKENWSLVQ QVKSLFQFPE ERTISFADIG LVSGHELLQQ GRSAGADDLK 240 VLQSRAAGDA EKQAQEASAA AAAAKNSYPE SEHSDSDCQF LKEPPIVDRQ QNAPKKRGRK 300 PGAGRVTPVN HVEAERQRRE KLNHRFYALR SVVPNVSRMD KASLLSDAVS YINELKGKVE 360 ELECQLQLRE SKKVKVEAVG DNQSTSSAAS SVASPVDVEV KIVGPDAMIR VQSENANYPS 420 AKLMNGLREL ELAVHHASIS SVNDIMLQDI VVKVPEGLRS EDGLRAALLR RLDQL

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MDELIVTSSS SSSITASLSQ PNHSTLQQRL QFILKTQTDS WAYAIFWQTS NDDDGRLFLA  60
WGDGFFQGTK AGRGGGVPVV VQTSHSTQQS ERKKVISGIQ ALIGSTQNSE NGDLITDAEW  120
FYVMSLARSF SAGDGVPGKA FSMGSLVWLS GAHRLQMYNC ERAKEAQIHG IQTLVCIPTG  180
AGVVELGSLE IIKENWSLVQ QVKSLFQFPE ERTISFADIG LVSGHELLQQ GRSAGADDLK  240
VLQSRAAGDA EKQAQEASAA AAAAKNSYPE SEHSDSDCQF LKEPPIVDRQ QNAPKKRGRK  300
PGAGRVTPVN HVEAERQRRE KLNHRFYALR SVVPNVSRMD KASLLSDAVS YINELKGKVE  360
ELECQLQLRE SKKVKVEAVG DNQSTSSAAS SVASPVDVEV KIVGPDAMIR VQSENANYPS  420
AKLMNGLREL ELAVHHASIS SVNDIMLQDI VVKVPEGLRS EDGLRAALLR RLDQL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	2e-75	bHLH family protein