PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019153960.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HB-other

Protein Properties

Length: 755aa MW: 80314 Da PI: 4.4445

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019153960.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.5	1.6e-06	13	74	6	55
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 +f+++++ e+e+ + ++ p+++ LA+k ++ +qV +WFqNrR+ XP_019153960.1 13 RFNPTEVAEMEAILQAhnTQVPTRDVLVSLAEKFsasaersgkvVVQMKQVWNWFQNRRYAL 74 588999999999999545999***********99999999999**************965 PP

Sequence ? help Back to Top
Protein Sequence Length: 755 aa Download sequence
MGRPPSNGGP SFRFNPTEVA EMEAILQAHN TQVPTRDVLV SLAEKFSASA ERSGKVVVQM 60 KQVWNWFQNR RYALRAKAAK TPSKVPAPVT HQSEPTIVRT VPQVPQPGPP PPSVRPMIQT 120 PQGPQPIAAP SVSAGKNGSD SSQMEFEAKS ARDGAWYDVA SFLSHRSMET GDPEVLVRFA 180 GFGAEEDEWV NVRRNVRQRS LPCESSECVA VLPGDLILCF QEGKEQALYF DAHVLDAQRR 240 RHDVRGCRCR FLVRYDHDQS EEIVPLRKIC RRPETDYRLE QLNAESATTK QQKSGTDPQT 300 ANTLRVYAFS ETAQKPPAIS SGKPVEPLAK KIKTDEHVHA TTMTSSAHID GSASTLNPPK 360 AVDHVNAGSN LPPMQQQQAS TDAQPGNTLE ANAPVESQKP LAESVQKLPA ESMPESSAES 420 KVTPPAEPTS MPPAESMPNP TVQNTEEEEH ATVAPISAAI SSVPTPNPVE STDEQLNPEE 480 NANVAVVAPV APAISPVTAP NPVEPTDGQL NPEEHANVAA TVAPAISSVT TPKPVEPTDG 540 QLNPEEHANV AATVAPAISS VTTSKPVEPT DGQLNPQEHA IVAASVAPAI SSVTTPNPVE 600 PTDKQLNPEE HPNVAATVAP AISSVTTPNP VEPTDEQLNP EELTNVAETV APATNSADTS 660 NPTEATDKQL KAYEQAAPAV APDSHTDISV ANEYKDVSTK DAENVSSENL GISEIPIQSD 720 VLMEICAAMD EDSNAVADMT GMLDTGGGSA NVQQG

Sequence ? help Back to Top

Protein Sequence Length: 755 aa Download sequence

MGRPPSNGGP SFRFNPTEVA EMEAILQAHN TQVPTRDVLV SLAEKFSASA ERSGKVVVQM  60
KQVWNWFQNR RYALRAKAAK TPSKVPAPVT HQSEPTIVRT VPQVPQPGPP PPSVRPMIQT  120
PQGPQPIAAP SVSAGKNGSD SSQMEFEAKS ARDGAWYDVA SFLSHRSMET GDPEVLVRFA  180
GFGAEEDEWV NVRRNVRQRS LPCESSECVA VLPGDLILCF QEGKEQALYF DAHVLDAQRR  240
RHDVRGCRCR FLVRYDHDQS EEIVPLRKIC RRPETDYRLE QLNAESATTK QQKSGTDPQT  300
ANTLRVYAFS ETAQKPPAIS SGKPVEPLAK KIKTDEHVHA TTMTSSAHID GSASTLNPPK  360
AVDHVNAGSN LPPMQQQQAS TDAQPGNTLE ANAPVESQKP LAESVQKLPA ESMPESSAES  420
KVTPPAEPTS MPPAESMPNP TVQNTEEEEH ATVAPISAAI SSVPTPNPVE STDEQLNPEE  480
NANVAVVAPV APAISPVTAP NPVEPTDGQL NPEEHANVAA TVAPAISSVT TPKPVEPTDG  540
QLNPEEHANV AATVAPAISS VTTSKPVEPT DGQLNPQEHA IVAASVAPAI SSVTTPNPVE  600
PTDKQLNPEE HPNVAATVAP AISSVTTPNP VEPTDEQLNP EELTNVAETV APATNSADTS  660
NPTEATDKQL KAYEQAAPAV APDSHTDISV ANEYKDVSTK DAENVSSENL GISEIPIQSD  720
VLMEICAAMD EDSNAVADMT GMLDTGGGSA NVQQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18380.1	1e-119	HB-other family protein