PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019153958.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HB-other

Protein Properties

Length: 757aa MW: 80514.2 Da PI: 4.4445

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019153958.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.5	1.6e-06	13	74	6	55
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 +f+++++ e+e+ + ++ p+++ LA+k ++ +qV +WFqNrR+ XP_019153958.1 13 RFNPTEVAEMEAILQAhnTQVPTRDVLVSLAEKFsasaersgkvVVQMKQVWNWFQNRRYAL 74 588999999999999545999***********99999999999**************965 PP

Sequence ? help Back to Top
Protein Sequence Length: 757 aa Download sequence
MGRPPSNGGP SFRFNPTEVA EMEAILQAHN TQVPTRDVLV SLAEKFSASA ERSGKVVVQM 60 KQVWNWFQNR RYALRAKAAK TPSKVPAPVT HQSEPTIVRT VPQVPQPGPP PPSVTVRPMI 120 QTPQGPQPIA APSVSAGKNG SDSSQMEFEA KSARDGAWYD VASFLSHRSM ETGDPEVLVR 180 FAGFGAEEDE WVNVRRNVRQ RSLPCESSEC VAVLPGDLIL CFQEGKEQAL YFDAHVLDAQ 240 RRRHDVRGCR CRFLVRYDHD QSEEIVPLRK ICRRPETDYR LEQLNAESAT TKQQKSGTDP 300 QTANTLRVYA FSETAQKPPA ISSGKPVEPL AKKIKTDEHV HATTMTSSAH IDGSASTLNP 360 PKAVDHVNAG SNLPPMQQQQ ASTDAQPGNT LEANAPVESQ KPLAESVQKL PAESMPESSA 420 ESKVTPPAEP TSMPPAESMP NPTVQNTEEE EHATVAPISA AISSVPTPNP VESTDEQLNP 480 EENANVAVVA PVAPAISPVT APNPVEPTDG QLNPEEHANV AATVAPAISS VTTPKPVEPT 540 DGQLNPEEHA NVAATVAPAI SSVTTSKPVE PTDGQLNPQE HAIVAASVAP AISSVTTPNP 600 VEPTDKQLNP EEHPNVAATV APAISSVTTP NPVEPTDEQL NPEELTNVAE TVAPATNSAD 660 TSNPTEATDK QLKAYEQAAP AVAPDSHTDI SVANEYKDVS TKDAENVSSE NLGISEIPIQ 720 SDVLMEICAA MDEDSNAVAD MTGMLDTGGG SANVQQG

Sequence ? help Back to Top

Protein Sequence Length: 757 aa Download sequence

MGRPPSNGGP SFRFNPTEVA EMEAILQAHN TQVPTRDVLV SLAEKFSASA ERSGKVVVQM  60
KQVWNWFQNR RYALRAKAAK TPSKVPAPVT HQSEPTIVRT VPQVPQPGPP PPSVTVRPMI  120
QTPQGPQPIA APSVSAGKNG SDSSQMEFEA KSARDGAWYD VASFLSHRSM ETGDPEVLVR  180
FAGFGAEEDE WVNVRRNVRQ RSLPCESSEC VAVLPGDLIL CFQEGKEQAL YFDAHVLDAQ  240
RRRHDVRGCR CRFLVRYDHD QSEEIVPLRK ICRRPETDYR LEQLNAESAT TKQQKSGTDP  300
QTANTLRVYA FSETAQKPPA ISSGKPVEPL AKKIKTDEHV HATTMTSSAH IDGSASTLNP  360
PKAVDHVNAG SNLPPMQQQQ ASTDAQPGNT LEANAPVESQ KPLAESVQKL PAESMPESSA  420
ESKVTPPAEP TSMPPAESMP NPTVQNTEEE EHATVAPISA AISSVPTPNP VESTDEQLNP  480
EENANVAVVA PVAPAISPVT APNPVEPTDG QLNPEEHANV AATVAPAISS VTTPKPVEPT  540
DGQLNPEEHA NVAATVAPAI SSVTTSKPVE PTDGQLNPQE HAIVAASVAP AISSVTTPNP  600
VEPTDKQLNP EEHPNVAATV APAISSVTTP NPVEPTDEQL NPEELTNVAE TVAPATNSAD  660
TSNPTEATDK QLKAYEQAAP AVAPDSHTDI SVANEYKDVS TKDAENVSSE NLGISEIPIQ  720
SDVLMEICAA MDEDSNAVAD MTGMLDTGGG SANVQQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18380.1	1e-119	HB-other family protein