PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019153778.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YA
Protein Properties Length: 320aa    MW: 35719.6 Da    PI: 9.6885
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019153778.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA92.84.2e-29188242258
       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      p++VNaKQy++I++RR+ Rak+e e+k+  k rkpylh SRh hA rRpRg+gGrF
  XP_019153778.1 188 GPIFVNAKQYHGIMRRRKCRAKAEMENKV--KPRKPYLHLSRHLHATRRPRGCGGRF 242
                     69***************************..9************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MGFVSLTAQQ FRDYNCYSSS FSYTILYYIG AGSRKSLVQK AGKLFMTMQS VFSKEHEGIA  60
QNPMVPWWSV AQPTAYDETL GQLKDASGNH KQSEGEGALE LEQSLSKGIP PQFTVFSGNV  120
TKFPQVEATI SVQPTSTEYR GSFELGFGQS VVYAKNPYSE QCYGVYSAYG PQVAGRIMLP  180
LNLSSDEGPI FVNAKQYHGI MRRRKCRAKA EMENKVKPRK PYLHLSRHLH ATRRPRGCGG  240
RFLNTKDVKG ATGSKRKRSE VGSMFDREDP EDHHRPHPIN AHLHSSLRAS PDMMMNTGHD  300
FLMAGKWMAA AADSCCNLKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.25e-48NF-YA family protein