PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019153536.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 416aa MW: 47277.6 Da PI: 8.11

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019153536.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.3	2.2e-17	77	175	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY++YA+ vGF+vr s+ +++ r+g ++k +vCs+e +++ + + + +r+r+++r+gC+a+l++k+ +dg+++v+ +el XP_019153536.1 77 DFYRQYASLVGFNVRCSSLRRN-REGVVVKDLLVCSREEFKQAVQGSvvvdgaldqaPVAPKRRRVSNRVGCRARLVLKMGDDGVFVVHFIELRY 170 6***************9999.8888************9999***999889999**************************** PP FAR1 86 nHela 90 nH l+ XP_019153536.1 171 NHCLC 175 998 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MVGCCRGSLC ISVYIVVAFY IGLKVFVLWV VCARSESQQG CVMDVSLDGT KFWTPSCDEA 60 VRPFEGQTFP SLAHGIDFYR QYASLVGFNV RCSSLRRNRE GVVVKDLLVC SREEFKQAVQ 120 GSVVVDGALD QAPVAPKRRR VSNRVGCRAR LVLKMGDDGV FVVHFIELRY NHCLCSDVAK 180 PFLRGNRSMD VQHQIFVLKC ARANVGPNRS FRLAREFAGS YSMLMFIVKK YAKKVDDCPD 240 YVFRYDVDSQ DQLCRAFWTD PIAKESFSAF GEVVSFDATC GTNRYGMVLV PFIGVDNHKR 300 GVTFVMGLIS REDVDCYVWL LQQFKSAMGC VPSCTITDQD PSMRVAVPRV FDTMRHRFCM 360 WHIMSKVGEK VGNVLSKDEE FRRALNDVVW CETSSVEEFE RGWQDVMEKY SLGDHR

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MVGCCRGSLC ISVYIVVAFY IGLKVFVLWV VCARSESQQG CVMDVSLDGT KFWTPSCDEA  60
VRPFEGQTFP SLAHGIDFYR QYASLVGFNV RCSSLRRNRE GVVVKDLLVC SREEFKQAVQ  120
GSVVVDGALD QAPVAPKRRR VSNRVGCRAR LVLKMGDDGV FVVHFIELRY NHCLCSDVAK  180
PFLRGNRSMD VQHQIFVLKC ARANVGPNRS FRLAREFAGS YSMLMFIVKK YAKKVDDCPD  240
YVFRYDVDSQ DQLCRAFWTD PIAKESFSAF GEVVSFDATC GTNRYGMVLV PFIGVDNHKR  300
GVTFVMGLIS REDVDCYVWL LQQFKSAMGC VPSCTITDQD PSMRVAVPRV FDTMRHRFCM  360
WHIMSKVGEK VGNVLSKDEE FRRALNDVVW CETSSVEEFE RGWQDVMEKY SLGDHR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	141	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-46	FAR1 family protein