PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019153532.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 732aa MW: 83908.7 Da PI: 8.7223

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019153532.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.2	3.6e-20	64	164	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fY++YA +vGF++r s+ + r+g+ ++++ vC++eg++++ ++ ++ +r+r+++rtgC+a+++ + + +++t++ + XP_019153532.1 64 EFYKHYAAKVGFDTRSSSIVTA-RDGTKIQKQIVCNREGFHNTGAQHcpsqssadagegPSRPKRRRVSNRTGCRARIMFRYIGAAGYQITTFIE 157 6************9998887.88889***********99999*****99899999************************** PP FAR1 84 eHnHela 90 +HnH+++ XP_019153532.1 158 KHNHNMS 164 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence
MEEFDRVPID IQSTNNPSLS PNSSSNGHTL TISPGMTQYW THHCEDEIKP AVDMIFKTLD 60 AGIEFYKHYA AKVGFDTRSS SIVTARDGTK IQKQIVCNRE GFHNTGAQHC PSQSSADAGE 120 GPSRPKRRRV SNRTGCRARI MFRYIGAAGY QITTFIEKHN HNMSSVMARQ FLKGNRNISS 180 VHQKFILDCA KANIGASKSH CLYSNIVGDY SEVGAVVLDF KNVRRDLRAY ILGDDAQILV 240 HNLIKKQEMC PAFAFDYEVD EDEQMSRLFW ADPMSKKNFA AFGDVVSFDA TYSTNRYNLA 300 MGMEPRIIVT DQDPAMKVAI PTVFKQARHR YCMWHIMCKV GEKVGPTLNK DEEFRNKLNS 360 IVWTSSLEPP DFEKQWRELM EKYNLVEHNW FKTMFEARKH WIPAYFRDVF MGGLLKTTSR 420 SESENYTYNR FTGPQSSLVE FMMNFDTALK SQRNTNAKLN SDNEGYNPDM KTPLGIEKHT 480 SIIYTITVFY QVQEEICASC FKCMVLSVRE DGGMLHYDIM DGKNKRFTVV HNVNDHEDKC 540 SCKMFEMVGL LCRHIFVVFR DLERIPLKYV VNRWTKDASL KATFEIDSVI YDQNGPKDEK 600 KMLLNKVWSD IHCCMDMAGS NMEQLTAFSQ VINEQKQLLL SGKEKFSPQQ SRRTVIESYC 660 GSTEISEINI LPPKQARNKG SGKRIKSSKE LAMEKQEGRK CNFCGVRGDH HDTRTCPLNP 720 KNKDKQKGKK KA

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence

MEEFDRVPID IQSTNNPSLS PNSSSNGHTL TISPGMTQYW THHCEDEIKP AVDMIFKTLD  60
AGIEFYKHYA AKVGFDTRSS SIVTARDGTK IQKQIVCNRE GFHNTGAQHC PSQSSADAGE  120
GPSRPKRRRV SNRTGCRARI MFRYIGAAGY QITTFIEKHN HNMSSVMARQ FLKGNRNISS  180
VHQKFILDCA KANIGASKSH CLYSNIVGDY SEVGAVVLDF KNVRRDLRAY ILGDDAQILV  240
HNLIKKQEMC PAFAFDYEVD EDEQMSRLFW ADPMSKKNFA AFGDVVSFDA TYSTNRYNLA  300
MGMEPRIIVT DQDPAMKVAI PTVFKQARHR YCMWHIMCKV GEKVGPTLNK DEEFRNKLNS  360
IVWTSSLEPP DFEKQWRELM EKYNLVEHNW FKTMFEARKH WIPAYFRDVF MGGLLKTTSR  420
SESENYTYNR FTGPQSSLVE FMMNFDTALK SQRNTNAKLN SDNEGYNPDM KTPLGIEKHT  480
SIIYTITVFY QVQEEICASC FKCMVLSVRE DGGMLHYDIM DGKNKRFTVV HNVNDHEDKC  540
SCKMFEMVGL LCRHIFVVFR DLERIPLKYV VNRWTKDASL KATFEIDSVI YDQNGPKDEK  600
KMLLNKVWSD IHCCMDMAGS NMEQLTAFSQ VINEQKQLLL SGKEKFSPQQ SRRTVIESYC  660
GSTEISEINI LPPKQARNKG SGKRIKSSKE LAMEKQEGRK CNFCGVRGDH HDTRTCPLNP  720
KNKDKQKGKK KA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	130	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-82	FAR1 family protein