PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019153450.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 395aa    MW: 45026.1 Da    PI: 9.0362
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019153450.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.49.8e-2362160190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                     +fY++Y++  GF++r s+ k+  r gei++r++vCs++g +   ++k          ++k+rr+r ++r+gC+akl  kke++g+++vt++++eH
  XP_019153450.1  62 QFYKAYGRAGGFDIRHSSFKRD-RAGEIMSRHLVCSRQGVKGGGRRKpivevragsgSKKQRRRRISNRVGCRAKLGFKKENTGEFMVTTFVEEH 155
                     6***************998887.8888**************9999999*********9************************************* PP

            FAR1  86 nHela 90 
                     nH+l+
  XP_019153450.1 156 NHSLC 160
                     ****8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    
MSADGDELQA TGLIGGDLGT GDVTQTTTGF TIAVNQYWKP NVDANLVPEV ERRFNTLHEG  60
IQFYKAYGRA GGFDIRHSSF KRDRAGEIMS RHLVCSRQGV KGGGRRKPIV EVRAGSGSKK  120
QRRRRISNRV GCRAKLGFKK ENTGEFMVTT FVEEHNHSLC SKGAKLFMRG NRQLNVAQQA  180
LLANCIKVNI GSSAAFRLCR EVGGSFESVG ATNMEFDNFK RDLQAYVDVI DGEMIIERLR  240
TKRELCVDFF FDYHLDEENR LARLFWADPI SRGSFSCYGD VISFDATYST NRYNLVFVPF  300
TGVDNRKRCI TFAAGLITRE DVHIMTKVSE KVGPGLANNE VFHKSLNDIV WNERISIDDF  360
EVQWKLLMEK YNLSEHRWFG KLFAEREHWI PAFFF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105125RRKPIVEVRAGSGSKKQRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-41FAR1 family protein