PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019153388.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 272aa    MW: 30712.5 Da    PI: 7.7473
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019153388.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.5e-18125179256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tk+q  +Le+ F+++ +++ ++++eLA++l+L  rqV vWFqNrRa+ k
  XP_019153388.1 125 RKKLRLTKQQSIVLEDSFKQHTTLNSKQKQELARRLNLRPRQVEVWFQNRRARTK 179
                     788899***********************************************98 PP
2HD-ZIP_I/II118.24.4e-38125214190
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                     +kk+rl+k+q+ +LE+sF+++++L++++K+elar+L+l+prqv+vWFqnrRARtk+kq+E+dye+L+++y++l++en+rL+ke  eL+++
  XP_019153388.1 125 RKKLRLTKQQSIVLEDSFKQHTTLNSKQKQELARRLNLRPRQVEVWFQNRRARTKLKQTEVDYEVLRKCYETLTDENRRLQKELLELKAA 214
                     69*************************************************************************************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MGLEDIYSTR LTLSLGSDDL HRQVYRQNKR SKPPSPISDN YLPSLSLGLP WEVKFEAMND  60
GSTAMMMNCC LQQASPAAAP SSFSDSSLKR EREISGGEED ELEAAEKGSP CRDEYQDDEE  120
VVGTRKKLRL TKQQSIVLED SFKQHTTLNS KQKQELARRL NLRPRQVEVW FQNRRARTKL  180
KQTEVDYEVL RKCYETLTDE NRRLQKELLE LKAAANQTTT AAPPFHMAAT LTMCPSCERT  240
YGGSTDSSAK FSISAGGKSH LFRSFLNPSE AC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130TRKKLRL
2174182RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.15e-55HD-ZIP family protein