PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019153233.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 529aa MW: 58976.5 Da PI: 4.3443

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019153233.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.2	1.8e-08	270	318	2	47
SSS-HHHHHHHHHHH....HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdav....kqlGggtWktIartmgkgRtlkqcksrwqky 47 +rW++eE+el+ d v + lG++ W+ +++++ Rt kq++s+++++ XP_019153233.1 270 LRWSEEEQELFHDIVfsnpASLGKNFWNHLSAEFP-SRTMKQIVSYYFNV 318 69***********4444455666******.*********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MVQKRPFDQE LQELSSKQPR HVEPSDQLAS LGVSQEPIAL KSHSSGEGED TPLKSQFTSE 60 EKFDSACATD VRSSERDIEP GIPGSASNSS WATSSTSEED VKSEGPYHIL VSPEHYNLDV 120 PYRNVSRSKL IYSSLMRSPP RKLVPIGPDY QADLPDFVGH EKKKTCYSEE TCKADITSQA 180 LESDSNGHLN DDDRLAGTCI IPMPKLESAG YNDESVGTGS GSGDCLCEDA GSIRCSRQHV 240 FEAREKLKTV LGEETFVKLG FYDIGEVVAL RWSEEEQELF HDIVFSNPAS LGKNFWNHLS 300 AEFPSRTMKQ IVSYYFNVFM LRRRAEQNRF DPLNVDSDND EWHAPEESSG DEAKMTDEDE 360 DSVVESPVYL DDYGRNEIYR AYDDVGLPIW EEYRDISNET NKAVNYESVK CADNVFGKCS 420 SEPTARNEDR DFPNGLGDEN GNCTSVTPKA PHVKSDIGKD WSRSFVGMGS DNGHDFVLEP 480 CSGKEWDVGF FSCPKSKVDL LPTCTMIEEV FGDKDWNYSS RGGDGHGSS

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MVQKRPFDQE LQELSSKQPR HVEPSDQLAS LGVSQEPIAL KSHSSGEGED TPLKSQFTSE  60
EKFDSACATD VRSSERDIEP GIPGSASNSS WATSSTSEED VKSEGPYHIL VSPEHYNLDV  120
PYRNVSRSKL IYSSLMRSPP RKLVPIGPDY QADLPDFVGH EKKKTCYSEE TCKADITSQA  180
LESDSNGHLN DDDRLAGTCI IPMPKLESAG YNDESVGTGS GSGDCLCEDA GSIRCSRQHV  240
FEAREKLKTV LGEETFVKLG FYDIGEVVAL RWSEEEQELF HDIVFSNPAS LGKNFWNHLS  300
AEFPSRTMKQ IVSYYFNVFM LRRRAEQNRF DPLNVDSDND EWHAPEESSG DEAKMTDEDE  360
DSVVESPVYL DDYGRNEIYR AYDDVGLPIW EEYRDISNET NKAVNYESVK CADNVFGKCS  420
SEPTARNEDR DFPNGLGDEN GNCTSVTPKA PHVKSDIGKD WSRSFVGMGS DNGHDFVLEP  480
CSGKEWDVGF FSCPKSKVDL LPTCTMIEEV FGDKDWNYSS RGGDGHGSS