PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019153175.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 846aa MW: 97207.6 Da PI: 6.138

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019153175.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.3	4.1e-26	88	190	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +Y+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k +e++ +ra +t+Cka+++vk++ dgkw ++++e+ XP_019153175.1 88 YYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYEKPanrprsrqgskqdQENATGRRACAKTDCKASMHVKRRPDGKWIIHRFEK 182 8**************************************99998899999999886666666699************************** PP FAR1 84 eHnHelap 91 eHnHel+p XP_019153175.1 183 EHNHELMP 190 ***986 PP

Sequence ? help Back to Top
Protein Sequence Length: 846 aa Download sequence
MDIDLRLPSG DHDKEEEETN GIVNLLDHEE KLDGVEVGGD MDIEEKIHVE DGGEMNSPMG 60 DMGEFKEDVN LEPLAGMEFE SHGEAYAYYQ EYARSMGFNT AIQNSRRSKT SREFIDAKFA 120 CSRYGTKREY EKPANRPRSR QGSKQDQENA TGRRACAKTD CKASMHVKRR PDGKWIIHRF 180 EKEHNHELMP AQAVSEQTKR MYAAMARQFA EYKNVVGLKH DSRSPSDKVR NLAMEAGEAN 240 ILLEFFIQMQ SMNSNFFYAI DVSEDHRLKN LFWTDAKSRH DYANFSDVVS FDTTYLRNKY 300 KMPLALFIGV NQHYQFMLLG CALLSDESSE TFSWVMRTWL KAMGDQAPKI IITDQEMVMK 360 SVVSEIMPST LHFFCQWHVL GKVSENLNHI IKQSEEFMAE FENCIYRSWT DEEFEKSWQN 420 LVQKFELGEN ELMMSLYEDR TKWVPTFMKN AFLAGMSTAL RSESLNSFFD KYVHRKTTIQ 480 EFVKLYEAIL QDRYEEEAKA DSDTWNKQPA LKSPSPFEKH VAGVYTHAVF KKFQVEVVAA 540 VACIPKDEKR DETAVTFIIQ DFEKSQEFTV TWNGHKSEVS CMCHMFEYKG FLCRHAMVVL 600 QIGGISTIPP QYILKRWTKD AKVRFPVIDG SEGVQSRVQR YNYLCQQAMR LAEEGSLSQE 660 SYRFAFRSLD ETLGNCVDAN SSNKNLVDAG TTSTPGLLCI EEDNQSRSMN KMNKKKNNPT 720 KKRKANSEPD VMAVGAPENL QQMDKLSSRP VTLDGYFGPQ HGLQGMVQLN LMAPTRDNYY 780 GNQQPIQGLG QLNSIAPTHD GYYGTQPTMH GLGQMDFFRT PNYPYGIREE PNVRPTQLHD 840 EASRHT

Sequence ? help Back to Top

Protein Sequence Length: 846 aa Download sequence

MDIDLRLPSG DHDKEEEETN GIVNLLDHEE KLDGVEVGGD MDIEEKIHVE DGGEMNSPMG  60
DMGEFKEDVN LEPLAGMEFE SHGEAYAYYQ EYARSMGFNT AIQNSRRSKT SREFIDAKFA  120
CSRYGTKREY EKPANRPRSR QGSKQDQENA TGRRACAKTD CKASMHVKRR PDGKWIIHRF  180
EKEHNHELMP AQAVSEQTKR MYAAMARQFA EYKNVVGLKH DSRSPSDKVR NLAMEAGEAN  240
ILLEFFIQMQ SMNSNFFYAI DVSEDHRLKN LFWTDAKSRH DYANFSDVVS FDTTYLRNKY  300
KMPLALFIGV NQHYQFMLLG CALLSDESSE TFSWVMRTWL KAMGDQAPKI IITDQEMVMK  360
SVVSEIMPST LHFFCQWHVL GKVSENLNHI IKQSEEFMAE FENCIYRSWT DEEFEKSWQN  420
LVQKFELGEN ELMMSLYEDR TKWVPTFMKN AFLAGMSTAL RSESLNSFFD KYVHRKTTIQ  480
EFVKLYEAIL QDRYEEEAKA DSDTWNKQPA LKSPSPFEKH VAGVYTHAVF KKFQVEVVAA  540
VACIPKDEKR DETAVTFIIQ DFEKSQEFTV TWNGHKSEVS CMCHMFEYKG FLCRHAMVVL  600
QIGGISTIPP QYILKRWTKD AKVRFPVIDG SEGVQSRVQR YNYLCQQAMR LAEEGSLSQE  660
SYRFAFRSLD ETLGNCVDAN SSNKNLVDAG TTSTPGLLCI EEDNQSRSMN KMNKKKNNPT  720
KKRKANSEPD VMAVGAPENL QQMDKLSSRP VTLDGYFGPQ HGLQGMVQLN LMAPTRDNYY  780
GNQQPIQGLG QLNSIAPTHD GYYGTQPTMH GLGQMDFFRT PNYPYGIREE PNVRPTQLHD  840
EASRHT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	0.0	FAR1 family protein