PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_019153155.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 300aa MW: 33355.7 Da PI: 7.5844 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.8 | 6e-19 | 13 | 58 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+++G+++W++I + ++ gR++k+c++rw + XP_019153155.1 13 KGPWSPEEDEMLERLVEKYGPRNWSLIGNSIP-GRSGKSCRLRWCNQ 58 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 56.1 | 8.6e-18 | 67 | 109 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +++a++++G++ W+tIar + gRt++ +k++w++ XP_019153155.1 67 PFTAEEDETIIRAHAKFGNK-WATIARLLS-GRTDNAIKNHWNST 109 89******************.*********.***********986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 300 aa Download sequence |
MEEKKEAAAD RIKGPWSPEE DEMLERLVEK YGPRNWSLIG NSIPGRSGKS CRLRWCNQLS 60 PEVEHRPFTA EEDETIIRAH AKFGNKWATI ARLLSGRTDN AIKNHWNSTL KRKCGSVSSE 120 NLSFEPPPPR GLPLKRSSSD GSPSDSDFSD IYNPIARTGG GKLPLPLPPH FPTMETPPSL 180 SSDPVTSLSL SLPGSNEAPP LINRRNHLLP IPQLPQVSPP AKVYLPPQPP QSFQFAAPPP 240 PQTAEKPFFS PEFLAELQEM IRKEVRNYMS GVEHNGLCTQ ADEAIQNAAA QRIGIWHRQD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37260.1 | 3e-71 | MYB family protein |