PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152906.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 538aa MW: 59685 Da PI: 6.5345

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152906.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.4	2.3e-29	61	145	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+ aL+++r+em+ +r+++ k+plWeevs+km+e g++rs+k+Ckek+en+ k++k++k+g+ +++++s +++fdqlea XP_019152906.1 61 RWPRQETIALLKIRTEMDAGFRDSNHKAPLWEEVSRKMAELGYRRSSKKCKEKFENVYKYHKRTKDGRAYKSDGKS--YRFFDQLEA 145 8******************************************************************9866665..*****85 PP
2	trihelix	103.7	1.4e-32	373	458	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k e+ aLi++r++m+++++++ k+plWeev++ m++ g +r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea XP_019152906.1 373 RWPKPEIEALIRIRTNMDTKYQENGPKGPLWEEVAAEMQKLGHRRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLEA 458 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence
MLDFSGGIVS RSGDGAAEAP ESGGGSSSEA GGVHFGEEDG AARAEEGGGG GGGERNSGGN 60 RWPRQETIAL LKIRTEMDAG FRDSNHKAPL WEEVSRKMAE LGYRRSSKKC KEKFENVYKY 120 HKRTKDGRAY KSDGKSYRFF DQLEAFGNHS TPRPPPPLTT FVAASPVPVG AQVTVSSTQE 180 PFGAPNPINS PPFPPPSQPL LGPQAEKRNN NNNCSVWCPT SSSSTSSDED IQRRSGRKRR 240 RRKDFLERVM RDVIEKQEEM QKKFLETIEK REIERTAREE AWRAQETARI NRDHDLLIQE 300 RSMAAAKEAA VIKLLQTIAE QHNIQIPTTT PTPEFPPPPP TSVAPPQTSV APPPPATDNN 360 NNSPVQNSAS ASRWPKPEIE ALIRIRTNMD TKYQENGPKG PLWEEVAAEM QKLGHRRNAK 420 RCKEKWENIN KYFKKVKESN KKRPEDSKTC PYFHQLEALY KEKSKPEASM NPLEAENSPI 480 MARPEQQWPP APVPGHNDHN DDNEEDDDSD DDNDEAGGGY EVLPTPGSAA AATTGTAE

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence

MLDFSGGIVS RSGDGAAEAP ESGGGSSSEA GGVHFGEEDG AARAEEGGGG GGGERNSGGN  60
RWPRQETIAL LKIRTEMDAG FRDSNHKAPL WEEVSRKMAE LGYRRSSKKC KEKFENVYKY  120
HKRTKDGRAY KSDGKSYRFF DQLEAFGNHS TPRPPPPLTT FVAASPVPVG AQVTVSSTQE  180
PFGAPNPINS PPFPPPSQPL LGPQAEKRNN NNNCSVWCPT SSSSTSSDED IQRRSGRKRR  240
RRKDFLERVM RDVIEKQEEM QKKFLETIEK REIERTAREE AWRAQETARI NRDHDLLIQE  300
RSMAAAKEAA VIKLLQTIAE QHNIQIPTTT PTPEFPPPPP TSVAPPQTSV APPPPATDNN  360
NNSPVQNSAS ASRWPKPEIE ALIRIRTNMD TKYQENGPKG PLWEEVAAEM QKLGHRRNAK  420
RCKEKWENIN KYFKKVKESN KKRPEDSKTC PYFHQLEALY KEKSKPEASM NPLEAENSPI  480
MARPEQQWPP APVPGHNDHN DDNEEDDDSD DDNDEAGGGY EVLPTPGSAA AATTGTAE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	237	241	RKRRR
2	237	243	RKRRRRK
3	237	244	RKRRRRKD
4	238	243	KRRRRK
5	239	244	RRRRKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	2e-74	Trihelix family protein