PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152873.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRF

Protein Properties

Length: 386aa MW: 41492.2 Da PI: 8.1837

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152873.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	82.5	3.7e-26	154	197	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e XP_019152873.1 154 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVE 197 79***************************************987 PP
2	QLQ	46.2	1.4e-16	79	114	1	36
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 s+F+ Q+q+L+ Q+l++++++a++PvPpeLl ++ XP_019152873.1 79 SYFSLGQWQELELQALIFRHMIAGAPVPPELLHLVK 114 789****************************98776 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MDFDLKQWRN QEESEAKVPR LVLDLHSTTT TASHGGGGGG SSSSALPLFV SEPPTSKLSA 60 FSSDSTPTAT TKFPRMGGSY FSLGQWQELE LQALIFRHMI AGAPVPPELL HLVKKSLFNS 120 APYYFPHPLH QYPHYHPASA PLMQAGYWGR AAMDPEPGRC RRTDGKKWRC SRDVVAGQKY 180 CERHMHRGRN RSRKPVEIPT PTPPTAAGGP TADAQPLSAV PGRDAPPHFT LSAATAPPSS 240 SIDLFHLSQR HHGEPIMESN GPLEAQKDGP AGGQTLRHFF DDWPRPLEEN ESSSAVASAT 300 NLSISIPGNA SSDFSLKLAT GPPLGGNMER TTAAWGTSHH QVQVGSAVGG PLAEALRSST 360 SNSSPTSVLH QLQRNSTTSE TSFITS

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MDFDLKQWRN QEESEAKVPR LVLDLHSTTT TASHGGGGGG SSSSALPLFV SEPPTSKLSA  60
FSSDSTPTAT TKFPRMGGSY FSLGQWQELE LQALIFRHMI AGAPVPPELL HLVKKSLFNS  120
APYYFPHPLH QYPHYHPASA PLMQAGYWGR AAMDPEPGRC RRTDGKKWRC SRDVVAGQKY  180
CERHMHRGRN RSRKPVEIPT PTPPTAAGGP TADAQPLSAV PGRDAPPHFT LSAATAPPSS  240
SIDLFHLSQR HHGEPIMESN GPLEAQKDGP AGGQTLRHFF DDWPRPLEEN ESSSAVASAT  300
NLSISIPGNA SSDFSLKLAT GPPLGGNMER TTAAWGTSHH QVQVGSAVGG PLAEALRSST  360
SNSSPTSVLH QLQRNSTTSE TSFITS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	2e-62	GRF family protein