PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152638.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 547aa MW: 59923.2 Da PI: 6.8957

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152638.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.7	3.8e-17	255	304	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+++P + ++K +Ka+ L +++eYI+ Lq XP_019152638.1 255 RSKHSATEQRRRSKINDRFQMLRDIIPLS----DQKRDKASFLLEVIEYIQFLQ 304 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence
MELPQPRAFG TDGRKTTHDF LSLYSPAEQD PRPRQGGFLR THDFLQPLEQ AENTVGKEES 60 KVEVTIAEKP PPPPSMEHNL PGGIGTYSIS YLQRVPKPEG SLFTMAQPSS TDRNDENSNC 120 SSYSGSGFTL WDESAVKKGK TGKENSSGER HVLRETGVNT GGQRPVAMEW PSQSSSNLKH 180 STAAFSSFSS SQQLAAQNNQ SFLNMITSAK SAQEEDEEED EEEFVIKKEP SPHPKGNLSV 240 KTVGKSNDQK PNTPRSKHSA TEQRRRSKIN DRFQMLRDII PLSDQKRDKA SFLLEVIEYI 300 QFLQEKVQKH EGSYQSWEHE PTKFPWNNCQ RGAQGFIDHS QGTNNASDPA LIFASKFADS 360 KPGISRTIPV NGQKAEPDMS TALIKDGGHP QPMSLPFDPN IFPLCGTRNI ASQPLPKLVS 420 GKDKSTSQHQ PQFPQSRSNT SNYTVASNEP KEQDPTIESG TISISSIYSQ GLLSTLTTAL 480 QSSGVDLSQA SISVHIDLGK RANGRLNSSA STIKGDDVST SNQPIPHSIV TSAGEESSQA 540 LKRIKTS

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence

MELPQPRAFG TDGRKTTHDF LSLYSPAEQD PRPRQGGFLR THDFLQPLEQ AENTVGKEES  60
KVEVTIAEKP PPPPSMEHNL PGGIGTYSIS YLQRVPKPEG SLFTMAQPSS TDRNDENSNC  120
SSYSGSGFTL WDESAVKKGK TGKENSSGER HVLRETGVNT GGQRPVAMEW PSQSSSNLKH  180
STAAFSSFSS SQQLAAQNNQ SFLNMITSAK SAQEEDEEED EEEFVIKKEP SPHPKGNLSV  240
KTVGKSNDQK PNTPRSKHSA TEQRRRSKIN DRFQMLRDII PLSDQKRDKA SFLLEVIEYI  300
QFLQEKVQKH EGSYQSWEHE PTKFPWNNCQ RGAQGFIDHS QGTNNASDPA LIFASKFADS  360
KPGISRTIPV NGQKAEPDMS TALIKDGGHP QPMSLPFDPN IFPLCGTRNI ASQPLPKLVS  420
GKDKSTSQHQ PQFPQSRSNT SNYTVASNEP KEQDPTIESG TISISSIYSQ GLLSTLTTAL  480
QSSGVDLSQA SISVHIDLGK RANGRLNSSA STIKGDDVST SNQPIPHSIV TSAGEESSQA  540
LKRIKTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	7e-85	bHLH family protein