PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152589.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

E2F/DP

Protein Properties

Length: 377aa MW: 41934.5 Da PI: 7.7217

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152589.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	71.8	7.5e-23	12	77	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l++++ +++ l+++a +L v +rRRiYDi+NVLe+++++++++kn++ wkg XP_019152589.1 12 RKQKSLGLLCSNFLSLYNREGVETIGLDDAAMRL---GV--ERRRIYDIVNVLESVGVLARRAKNRYMWKG 77 79***************999********.....****************************98 PP
2	E2F_TDP	74.3	1.3e-23	146	226	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 rkeksL+lltq+f+kl+ +++ ++++l+++ak L+ + +knk+RR+YDi+NVL++++ iek ++k+++rw g XP_019152589.1 146 RKEKSLGLLTQNFIKLFLCTNMEMICLEDAAKFLLGDgrppsMTKNKVRRLYDIANVLSSMKFIEKtqhpeTRKPAFRWLG 226 79*************************************9999*****************9999999****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MASKDSGSVY SRKQKSLGLL CSNFLSLYNR EGVETIGLDD AAMRLGVERR RIYDIVNVLE 60 SVGVLARRAK NRYMWKGFEV VPNVLQELKE EGLKEGIGAS DRSLSLQVSD DDDDMHHSNP 120 NASNQNDKSE ATSVLRLAGP PRTDNRKEKS LGLLTQNFIK LFLCTNMEMI CLEDAAKFLL 180 GDGRPPSMTK NKVRRLYDIA NVLSSMKFIE KTQHPETRKP AFRWLGLEGK SADMSEINLG 240 CNQSKKRVFG TELTNTPIKR CKLVPLVDGD AAETKLEAQI KCGSLDCEAN ISTLDPGSRT 300 SAKGYQFGPF APVSVPKDEA HESGHGSQLL SDCESLASTC RPQYHNQALR ELFHHYVQAW 360 SSWYSEVAGK NPIEVQS

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MASKDSGSVY SRKQKSLGLL CSNFLSLYNR EGVETIGLDD AAMRLGVERR RIYDIVNVLE  60
SVGVLARRAK NRYMWKGFEV VPNVLQELKE EGLKEGIGAS DRSLSLQVSD DDDDMHHSNP  120
NASNQNDKSE ATSVLRLAGP PRTDNRKEKS LGLLTQNFIK LFLCTNMEMI CLEDAAKFLL  180
GDGRPPSMTK NKVRRLYDIA NVLSSMKFIE KTQHPETRKP AFRWLGLEGK SADMSEINLG  240
CNQSKKRVFG TELTNTPIKR CKLVPLVDGD AAETKLEAQI KCGSLDCEAN ISTLDPGSRT  300
SAKGYQFGPF APVSVPKDEA HESGHGSQLL SDCESLASTC RPQYHNQALR ELFHHYVQAW  360
SSWYSEVAGK NPIEVQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.2	1e-111	E2F/DP family protein