PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152358.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

DBB

Protein Properties

Length: 317aa MW: 34296.2 Da PI: 7.7257

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152358.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.5	1e-06	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ ++++e++++C ++ lC C H+ H+ XP_019152358.1 4 QCDACHNHEASFYCVADEAALCSACDHRVHHAnklaskHQ 43 7**************************9964446666666 PP
2	zf-B_box	23.6	1.1e-07	54	92	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + + C+ ++e + +fC++++ lC++C + +Hk Ht XP_019152358.1 54 QGPLCDICQERNGFFFCQQDRAILCRECDVPIHKAneHT 92 6789****99*******************878865 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
MKIQCDACHN HEASFYCVAD EAALCSACDH RVHHANKLAS KHQRFSLLQP PAKQGPLCDI 60 CQERNGFFFC QQDRAILCRE CDVPIHKANE HTQKHNRFLL TGVKLSTTSA VYSSSSSSSS 120 SSSPSSSSSS SSSTVALSAN SPSNLKSQNS RIQPAVIPPP AVVSPAIHNP LSKPTNKPPI 180 SSTVQEVTAA IKGTGNGQLM NGGGNGSTTS SILEYLEMLP WYHVEELLDS SHGLCKIGLS 240 DAFPQTLHLQ ANQNPDFSAA TIAFGDQIGF EDSINEVAST KASREWRNDN NNNNSFAVPQ 300 PQINRPPTTF KRLRTSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39070.1	2e-48	DBB family protein