PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019152288.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRF

Protein Properties

Length: 355aa MW: 39002.3 Da PI: 8.2706

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019152288.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.4	7.1e-25	84	128	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ XP_019152288.1 84 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 128 79****************************************986 PP
2	QLQ	66.1	8.2e-23	23	58	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa Q+q+L++Q+++yKyL+a++PvPp+L+++i++ XP_019152288.1 23 PFTAVQWQELEHQAMIYKYLVAGVPVPPDLVVPIRR 58 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MSGTSTSVSG GAVGYGYGGF RPPFTAVQWQ ELEHQAMIYK YLVAGVPVPP DLVVPIRRSF 60 EALSSRFFHH PTLGYCSYYG KKFDPEPGRC RRTDGKKWRC SKDAYPDSKY CERHMHRGRN 120 RSRKPVESQS ASQPLSTAMS HITSGSSATS GSFQSTDRSF QNMPLYSIAN SEGLCYGSPA 180 TATKLQMECA SYGRDNKDFW YTHGMNPNAD EHNFPPETSA SVGSLGMGSN IDNAWPPVQF 240 QVSSTPMLKL KNESLLLGSS SSNVHLPGGV YEPIADATIP KQRQQHCLFG SDINSPGTVK 300 QEQQSMRPFF SEWPATKESW SNLDSDGSNK TQLSISIPVT TSDFSPRNAG SQNDA

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MSGTSTSVSG GAVGYGYGGF RPPFTAVQWQ ELEHQAMIYK YLVAGVPVPP DLVVPIRRSF  60
EALSSRFFHH PTLGYCSYYG KKFDPEPGRC RRTDGKKWRC SKDAYPDSKY CERHMHRGRN  120
RSRKPVESQS ASQPLSTAMS HITSGSSATS GSFQSTDRSF QNMPLYSIAN SEGLCYGSPA  180
TATKLQMECA SYGRDNKDFW YTHGMNPNAD EHNFPPETSA SVGSLGMGSN IDNAWPPVQF  240
QVSSTPMLKL KNESLLLGSS SSNVHLPGGV YEPIADATIP KQRQQHCLFG SDINSPGTVK  300
QEQQSMRPFF SEWPATKESW SNLDSDGSNK TQLSISIPVT TSDFSPRNAG SQNDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	5e-50	GRF family protein