PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019151869.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 576aa MW: 64454.2 Da PI: 7.9123

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019151869.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.3	1.4e-19	393	478	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA++vGFsvrk k+ ++ +++i++++f+Cs+ g++ + ++ + ++ rtgC a ++ + +g+w vt+ e+ HnHel+ XP_019151869.1 393 LYNDYAYRVGFSVRKGKQLYKGSTNTIKMKRFYCSQAGYKVKVNTV---KAYSKIDLRTGCGAFVQFGVDGNGVWTVTRHEKGHNHELC 478 7***************99999999*********9997665...889999*******************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence
MRNQTEHPKI SIPRLSPLCP YFTTSILPFI PFPRTLGVNC STGATHWGAV TSGFNIFSKL 60 ITEIGDPVDF ELPDWLNMWQ PEPYTFIKRN IYLTKRIKRR LEDDGLFCSC NSVAGSSDVC 120 GRDCLCSMLM SSCSSGCKCG GSCLNKPFHQ RPAKKMKIVK TEKCGSGIVA DEDIKQGEFV 180 IEYVGEVIDD KTCEERLWKM KHLGETNFYL CEINRNTVID ATYKGNKSRY INHSCCPNTE 240 MQKWTIDGET RVGIFATCDI KKGEHLSYDY QFVQFGADQD CHCGAVGCRQ KLGVKPTKLK 300 ISSSDAALHL AACQVAATSP KVRTLLSARP EEATDHAHLN VDGSSSIPVN QDLVGVLVST 360 DQADLNIDGS SSIPADQDLV GVSVNNVDEA YELYNDYAYR VGFSVRKGKQ LYKGSTNTIK 420 MKRFYCSQAG YKVKVNTVKA YSKIDLRTGC GAFVQFGVDG NGVWTVTRHE KGHNHELCAS 480 DKRHLLRSHR TDRRVRNNQL CSHRHLLGVA PSVWVVEMTR KFQRLIVSSQ DNNVARQFCE 540 EAFENANKRI EAELGYVHIE EFDVSSSSDM NKSLEV

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence

MRNQTEHPKI SIPRLSPLCP YFTTSILPFI PFPRTLGVNC STGATHWGAV TSGFNIFSKL  60
ITEIGDPVDF ELPDWLNMWQ PEPYTFIKRN IYLTKRIKRR LEDDGLFCSC NSVAGSSDVC  120
GRDCLCSMLM SSCSSGCKCG GSCLNKPFHQ RPAKKMKIVK TEKCGSGIVA DEDIKQGEFV  180
IEYVGEVIDD KTCEERLWKM KHLGETNFYL CEINRNTVID ATYKGNKSRY INHSCCPNTE  240
MQKWTIDGET RVGIFATCDI KKGEHLSYDY QFVQFGADQD CHCGAVGCRQ KLGVKPTKLK  300
ISSSDAALHL AACQVAATSP KVRTLLSARP EEATDHAHLN VDGSSSIPVN QDLVGVLVST  360
DQADLNIDGS SSIPADQDLV GVSVNNVDEA YELYNDYAYR VGFSVRKGKQ LYKGSTNTIK  420
MKRFYCSQAG YKVKVNTVKA YSKIDLRTGC GAFVQFGVDG NGVWTVTRHE KGHNHELCAS  480
DKRHLLRSHR TDRRVRNNQL CSHRHLLGVA PSVWVVEMTR KFQRLIVSSQ DNNVARQFCE  540
EAFENANKRI EAELGYVHIE EFDVSSSSDM NKSLEV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	2e-14	FAR1 family protein