PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019151855.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NF-YC | ||||||||
Protein Properties | Length: 275aa MW: 30352.6 Da PI: 4.9499 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 58.6 | 1.3e-18 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ ++++ ++fdfl ++v + XP_019151855.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLSRGAKTVNSLHLKHCIQSYNVFDFLREVVSK 86 5789************************************************************************99976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence |
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITLSRGAK 60 TVNSLHLKHC IQSYNVFDFL REVVSKVPDY GHSDTGAEVP KRRKIATDEL NDSDDECKRS 120 RMEMSHPSGS GRGRGRGRGR GRGRGARADR DHRHTDVEFD SSVSSEHTTI QNPDLGISKE 180 NCIESKDSPR PDANATDGDK PSVKDVNLNA NLDETADKSV TTPVAAAAAP PAAPVNVTDE 240 PPVLTEIDRM AVDPLHVAQF NSNVEEEEED YDEEE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 141 | RGRGRGRGRG |
2 | 132 | 142 | RGRGRGRGRGR |
3 | 134 | 143 | RGRGRGRGRG |
4 | 134 | 144 | RGRGRGRGRGR |
5 | 136 | 145 | RGRGRGRGRG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 4e-66 | NF-YC family protein |