PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019151847.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NF-YC | ||||||||
Protein Properties | Length: 282aa MW: 31413.8 Da PI: 5.1762 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 48.4 | 2.1e-15 | 6 | 93 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdi.......aaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ + ++++ ++fdfl ++v + XP_019151847.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLSRGAKTVNSLHFkrdrewrKHCIQSYNVFDFLREVVSK 93 5789******************************************99999999998744331111122568899999****999876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence |
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITLSRGAK 60 TVNSLHFKRD REWRKHCIQS YNVFDFLREV VSKVPDYGHS DTGAEVPKRR KIATDELNDS 120 DDECKRSRME MSHPSGSGRG RGRGRGRGRG RGARADRDHR HTDVEFDSSV SSEHTTIQNP 180 DLGISKENCI ESKDSPRPDA NATDGDKPSV KDVNLNANLD ETADKSVTTP VAAAAAPPAA 240 PVNVTDEPPV LTEIDRMAVD PLHVAQFNSN VEEEEEDYDE EE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 148 | RGRGRGRGRG |
2 | 139 | 149 | RGRGRGRGRGR |
3 | 141 | 150 | RGRGRGRGRG |
4 | 141 | 151 | RGRGRGRGRGR |
5 | 143 | 152 | RGRGRGRGRG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 2e-62 | NF-YC family protein |