PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019151839.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 655aa MW: 75091.4 Da PI: 8.4184

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019151839.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.6	8.1e-10	470	510	3	40
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 WT+eE +ll ++v+++++g +W+ I++++g+gRt +++ XP_019151839.1 470 EWTKEEIDLLRKGVQKYPKGtsrRWEVISEYIGTGRTVEEI 510 7************************************9886 PP
2	Myb_DNA-binding	27.5	7.1e-09	598	642	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +W+ + lv+a k ++++ +W+++a+ ++ g+t +qck ++ XP_019151839.1 598 AWSVVQERALVQALKTFPKEvsqRWERVAAAVP-GKTVNQCKKKFT 642 8******************************.*******986 PP

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence
MAIRDTLRLI SYEKEIVNGE PIFVSSNCLP IKAGRFEPAG HSFHSAALRL IGCFEEENIE 60 DSNQDVPTDK EESNFYSSES YSSKSKKKSS AEAKEQDHYA LLGLSHLRYL ATEDQIRKSY 120 REAALKHHPD KQAILLLAEE TEAAKQAKKE EIENHFKAIQ EAYEVLIDPI RRRVFDSTDE 180 FDDEIPTECA PQDFFKVFGP AFLRNGRWSV SQPVPLLGND NTPFKEVDSF YDFWYSFKSW 240 REFPHADEFD LEQAESRDHK RWMERQNAKL TEKARKEEYA RIRMLVDNAY KRDPRIVRRK 300 EEEKAEKQRK KEAKVLAKKL QEEEAARIAE EERRRKEEEE KRAAEAALQQ KKLKEKEKKL 360 LRKERTRLRT ISAPLLSENL LGLTNDDVEH LCTALNIDQL KNLCDGIEGR VGIAKAELLR 420 EALGRDDNSK DEKLNEKKNV KHEKKNVQQN GSSAANGQNP FSSNEKKERE WTKEEIDLLR 480 KGVQKYPKGT SRRWEVISEY IGTGRTVEEI LKATKTVLLQ KPDSAKAFDS FLEKRKPAQT 540 IASPLTTREE VEGTSNANKT ENNSGSKVPN SQSSPSQSSS CQNPPTDDLA ANVAEGDAWS 600 VVQERALVQA LKTFPKEVSQ RWERVAAAVP GKTVNQCKKK FTLLKESFRN KKNAA

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence

MAIRDTLRLI SYEKEIVNGE PIFVSSNCLP IKAGRFEPAG HSFHSAALRL IGCFEEENIE  60
DSNQDVPTDK EESNFYSSES YSSKSKKKSS AEAKEQDHYA LLGLSHLRYL ATEDQIRKSY  120
REAALKHHPD KQAILLLAEE TEAAKQAKKE EIENHFKAIQ EAYEVLIDPI RRRVFDSTDE  180
FDDEIPTECA PQDFFKVFGP AFLRNGRWSV SQPVPLLGND NTPFKEVDSF YDFWYSFKSW  240
REFPHADEFD LEQAESRDHK RWMERQNAKL TEKARKEEYA RIRMLVDNAY KRDPRIVRRK  300
EEEKAEKQRK KEAKVLAKKL QEEEAARIAE EERRRKEEEE KRAAEAALQQ KKLKEKEKKL  360
LRKERTRLRT ISAPLLSENL LGLTNDDVEH LCTALNIDQL KNLCDGIEGR VGIAKAELLR  420
EALGRDDNSK DEKLNEKKNV KHEKKNVQQN GSSAANGQNP FSSNEKKERE WTKEEIDLLR  480
KGVQKYPKGT SRRWEVISEY IGTGRTVEEI LKATKTVLLQ KPDSAKAFDS FLEKRKPAQT  540
IASPLTTREE VEGTSNANKT ENNSGSKVPN SQSSPSQSSS CQNPPTDDLA ANVAEGDAWS  600
VVQERALVQA LKTFPKEVSQ RWERVAAAVP GKTVNQCKKK FTLLKESFRN KKNAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	333	354	RRRKEEEEKRAAEAALQQKKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11450.1	0.0	MYB family protein