PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019151687.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 413aa MW: 44481.8 Da PI: 5.4769

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019151687.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.9	2.4e-18	53	98	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G ++W++Iar ++ gR++k+c++rw + XP_019151687.1 53 KGPWSPEEDAILCELVSKFGARNWTLIARGIP-GRSGKSCRLRWCNQ 98 79****************************.*********985 PP
2	Myb_DNA-binding	59.1	9.6e-19	105	149	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++++eEd++++ a++ +G++ W++Ia++++ gRt++ +k++w++ XP_019151687.1 105 RKPFSEEEDQIIIAAHAIHGNK-WASIAKMLP-GRTDNAIKNHWNST 149 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MEGETEERSD LKLVAVAASD ANGDGASVAV DGAEAMVLDG GGDENCGSGG KVKGPWSPEE 60 DAILCELVSK FGARNWTLIA RGIPGRSGKS CRLRWCNQLD PAVKRKPFSE EEDQIIIAAH 120 AIHGNKWASI AKMLPGRTDN AIKNHWNSTL RRRFAATNRS TLQCGNMFDD QSVDRARASS 180 EETKSCGYIN QYKSLEGGDT SHAECRPNQT EDTPQVIEKC CAPDKTSPVI YESNLPAPAA 240 NSNPSVSRPV AKIGAFNVYY PSSAGCASSS TMPMQGPLIH PSMPDLEICN FLKSASTDPL 300 IPSQCGHGCC RAPCGGGSSQ SSLLGPEFIE FEELPPISSH KLAAIAKDLN NVAWIRSSLE 360 NPDRVPDSRT PLYASTNTEM EHSMKTDQLC FEGRNQLTVP TTNTFPKLLQ FAT

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MEGETEERSD LKLVAVAASD ANGDGASVAV DGAEAMVLDG GGDENCGSGG KVKGPWSPEE  60
DAILCELVSK FGARNWTLIA RGIPGRSGKS CRLRWCNQLD PAVKRKPFSE EEDQIIIAAH  120
AIHGNKWASI AKMLPGRTDN AIKNHWNSTL RRRFAATNRS TLQCGNMFDD QSVDRARASS  180
EETKSCGYIN QYKSLEGGDT SHAECRPNQT EDTPQVIEKC CAPDKTSPVI YESNLPAPAA  240
NSNPSVSRPV AKIGAFNVYY PSSAGCASSS TMPMQGPLIH PSMPDLEICN FLKSASTDPL  300
IPSQCGHGCC RAPCGGGSSQ SSLLGPEFIE FEELPPISSH KLAAIAKDLN NVAWIRSSLE  360
NPDRVPDSRT PLYASTNTEM EHSMKTDQLC FEGRNQLTVP TTNTFPKLLQ FAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	4e-87	MYB family protein