PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019151555.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 268aa    MW: 29803.6 Da    PI: 9.8458
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019151555.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.12.6e-1420103186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  + +Liea  ++  +l+rg+l++++W+ev++++  r+ g+  +r+ +qCk++ + l+k+yk +k  ++       s +p++++l+
  XP_019151555.1  20 CWSEGATETLIEAWGDRYIKLNRGNLRQKDWKEVADAVnsRQDGVkpQRTDIQCKNRVDTLKKKYKLEKSKSSP------SIWPFYHRLD 103
                     7*************************************9977777668******************99887775......57*****997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MEAPVAQSKP RPHAGGREDC WSEGATETLI EAWGDRYIKL NRGNLRQKDW KEVADAVNSR  60
QDGVKPQRTD IQCKNRVDTL KKKYKLEKSK SSPSIWPFYH RLDFLVGTTS ATPPPPPRKS  120
TTITLTVKPG SSPNNAKPTA LVYSGGSSKP NSSGSNNSSL GGGAGDDDLL FTGPGKKRKL  180
DYVDLSEETT AYKELARAIL RFGEIYERIE SSKQQQIMEL EKQRMEFSKD LEVQRMNMFM  240
EAQLQLEKSK RTAKHSPAPG NEAVGEAT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.12e-64Trihelix family protein