PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019151305.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WOX

Protein Properties

Length: 195aa MW: 22310.8 Da PI: 8.229

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019151305.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.4	7.8e-21	23	84	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++ R+++t+eq+++L elF++ r+p+++++++++++l +++ ++V++WFqN++a+e++ XP_019151305.1 23 KCGRWNPTSEQVKVLTELFRSgLRTPTTDQIQKISSQLsfygKIESKNVFYWFQNHKARERQ 84 568***************99************************************97 PP
2	Wus_type_Homeobox	114.3	5.9e-37	23	86	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++ RW+Pt+eQ+k+L+el++sGlrtP++++iq+i+++L+ yGkie+kNVfyWFQN+kaRerqk+ XP_019151305.1 23 KCGRWNPTSEQVKVLTELFRSGLRTPTTDQIQKISSQLSFYGKIESKNVFYWFQNHKARERQKR 86 578***********************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence
MEEGMSGFYV GAPRGGGGGG GSKCGRWNPT SEQVKVLTEL FRSGLRTPTT DQIQKISSQL 60 SFYGKIESKN VFYWFQNHKA RERQKRRRVV LVDETKEDNL IPQHQRKDTN IPSTKHINTK 120 YNEVSDAERV IETLQLFPLN STRESESEPE KLRVFGNEED GCNNNKENSS FGYTINGAEV 180 YHHHNPMLDL RLSFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	89	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11260.1	7e-53	WOX family protein